Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J84_RS14830 Genome accession   NZ_CP027761
Coordinates   3253927..3254562 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas sp. R11-23-07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3248927..3259562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J84_RS14795 (C4J84_2940) - 3249298..3249969 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  C4J84_RS14800 (C4J84_2941) murB 3250041..3251060 (-) 1020 WP_124435622.1 UDP-N-acetylmuramate dehydrogenase -
  C4J84_RS14805 (C4J84_2942) - 3251057..3251521 (-) 465 WP_124435623.1 low molecular weight protein-tyrosine-phosphatase -
  C4J84_RS14810 (C4J84_2943) kdsB 3251521..3252285 (-) 765 WP_124363254.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J84_RS14815 (C4J84_2944) - 3252282..3252467 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J84_RS14820 (C4J84_2945) lpxK 3252492..3253502 (-) 1011 WP_124435624.1 tetraacyldisaccharide 4'-kinase -
  C4J84_RS14825 (C4J84_2946) - 3253502..3253930 (-) 429 WP_124363256.1 biopolymer transporter ExbD -
  C4J84_RS14830 (C4J84_2947) exbB 3253927..3254562 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J84_RS14835 (C4J84_2948) comA 3254672..3256897 (-) 2226 WP_124371044.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J84_RS14840 (C4J84_2949) - 3257033..3257548 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J84_RS14845 (C4J84_2950) - 3257552..3258910 (-) 1359 WP_124371045.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=280292 C4J84_RS14830 WP_122676958.1 3253927..3254562(-) (exbB) [Pseudomonas sp. R11-23-07]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280292 C4J84_RS14830 WP_122676958.1 3253927..3254562(-) (exbB) [Pseudomonas sp. R11-23-07]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAACTGCGCGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCAGCGCGGGTGATCCATGAGTTGGAGCGCTACAT
CAACGCCCTCGGTACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCTGCGGTGCTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment