Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J85_RS16280 Genome accession   NZ_CP027760
Coordinates   3542086..3544311 (-) Length   741 a.a.
NCBI ID   WP_124410214.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-34-07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537086..3549311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J85_RS16245 (C4J85_3264) murB 3537455..3538474 (-) 1020 WP_124410211.1 UDP-N-acetylmuramate dehydrogenase -
  C4J85_RS16250 (C4J85_3265) - 3538471..3538935 (-) 465 WP_124410212.1 low molecular weight protein-tyrosine-phosphatase -
  C4J85_RS16255 (C4J85_3266) kdsB 3538935..3539699 (-) 765 WP_124367381.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J85_RS16260 (C4J85_3267) - 3539696..3539881 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J85_RS16265 (C4J85_3268) lpxK 3539906..3540916 (-) 1011 WP_124410213.1 tetraacyldisaccharide 4'-kinase -
  C4J85_RS16270 (C4J85_3269) - 3540916..3541344 (-) 429 WP_124367383.1 biopolymer transporter ExbD -
  C4J85_RS16275 (C4J85_3270) exbB 3541341..3541976 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J85_RS16280 (C4J85_3271) comA 3542086..3544311 (-) 2226 WP_124410214.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J85_RS16285 (C4J85_3272) - 3544447..3544962 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J85_RS16290 (C4J85_3273) - 3544966..3546324 (-) 1359 WP_124410215.1 sensor histidine kinase -
  C4J85_RS16295 (C4J85_3274) - 3546311..3547039 (-) 729 WP_124410216.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80544.60 Da        Isoelectric Point: 10.9112

>NTDB_id=280269 C4J85_RS16280 WP_124410214.1 3542086..3544311(-) (comA) [Pseudomonas sp. R4-34-07]
MRTGMFALALGLLTLRFLPVLPPTGWLLAMLVLALMLVPFRTYPLAFFLMGLSWACISAQWALDDRLRPALDGETRWVEG
RVVGLPQQTDTGVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLTPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRTEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFIAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWLKVLALLASQLPAWTPAEVPLVYWLVSLAGAALLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQAVILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAVARGLPIRRVVGGETDGLPAFLGTEPCISGERWEWDGVSFVLWQWSGAISGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=280269 C4J85_RS16280 WP_124410214.1 3542086..3544311(-) (comA) [Pseudomonas sp. R4-34-07]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGTTGCTGACCCTGCGTTTTCTACCGGTGTTGCCGCCCACCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTAGTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGATGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAGCACTGGACGGCGAAACACGATGGGTGGAAGGG
CGCGTCGTCGGCTTGCCTCAGCAGACCGACACCGGCGTGCGTTTTGACCTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGCGGGCCGCCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCTGGCCTGCTCAACTTTCACGGTTTCGACCACGAGGCCTGGTTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTGAAAGACGGTGAGCGCCTGACGCCAGCCCGCAACGCCCTGCGCGACAGCCTGCGCCAGCGCCTGATGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTGCGCACGGAGCAATGGCAGGTAT
TGCAAGACACCGGCACCGTGCACCTGTTGGTTATCTCCGGCCAACACATTGGCTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATTGC
AGCGCTGGGTTATGGCCTGCTGGCGGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCCCTG
GCCAGTCTGCAGCCGGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGAGGGCGGCTCGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCACAGTGGTTGATTGCCATCGGTTTGTTTCCAGTCCTGCTGGTGCTGGGTT
TACCCATCAGCCTCACCGCGCCTGTGGCCAATTTATTCGCTGTGCCGTGGATCAGTCTGGTGGTGTTGCCATTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTCTGGTTGGCCGGCGGAGCGCTGGAGGGATGGCT
CAAGGTGCTGGCGCTGCTGGCCTCGCAGTTGCCGGCCTGGACGCCGGCCGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGCGTTATTGCTGCTGCCCAAGGGGGTGCCATTTCGGTTGCTGGGCTGGCCCATGCTGCTGTTGGCGGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTGACGGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCTGTGATCTT
GCGCACCCGCAACCACGCCTTGCTTTACGACGCGGGGCCGCGTTCGGGGGCGGTCGACCTGGGTGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGCTGCTACTGAGCCATGCCGACGCCGATCATGCTGGTGGCGCT
GCAGCTGTCGCCCGCGGGCTGCCCATCCGGCGTGTGGTCGGCGGCGAAACCGACGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTATCAGTGGCGAACGATGGGAGTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCCGGCGCCATCAGTGGCA
ACGCCAAATCCTGTGTGTTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGGGATATCGACCGTGCGGCGGAG
CGCGCACTGCTTGACACACCGTTGGCGGTGCCCACCGATTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCTTTTGTGCAACGGCTTGCGCCTGGATCGGTGCTGATCTCCAGAGGCCGGGGCAATGCCTTTGGTCATCCTCATT
CGCAAGTGGTAGAACGCTATCGGGCCCTGGGCAGCCGGCTATACGACAGCGCCGAACAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCTGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.031

0.575
  comA Ralstonia pseudosolanacearum GMI1000

35.279

100

0.375

Multiple sequence alignment