Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J85_RS16275 Genome accession   NZ_CP027760
Coordinates   3541341..3541976 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-34-07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3536341..3546976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J85_RS16240 (C4J85_3263) - 3536712..3537383 (+) 672 WP_124410210.1 Bax inhibitor-1/YccA family protein -
  C4J85_RS16245 (C4J85_3264) murB 3537455..3538474 (-) 1020 WP_124410211.1 UDP-N-acetylmuramate dehydrogenase -
  C4J85_RS16250 (C4J85_3265) - 3538471..3538935 (-) 465 WP_124410212.1 low molecular weight protein-tyrosine-phosphatase -
  C4J85_RS16255 (C4J85_3266) kdsB 3538935..3539699 (-) 765 WP_124367381.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J85_RS16260 (C4J85_3267) - 3539696..3539881 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J85_RS16265 (C4J85_3268) lpxK 3539906..3540916 (-) 1011 WP_124410213.1 tetraacyldisaccharide 4'-kinase -
  C4J85_RS16270 (C4J85_3269) - 3540916..3541344 (-) 429 WP_124367383.1 biopolymer transporter ExbD -
  C4J85_RS16275 (C4J85_3270) exbB 3541341..3541976 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J85_RS16280 (C4J85_3271) comA 3542086..3544311 (-) 2226 WP_124410214.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J85_RS16285 (C4J85_3272) - 3544447..3544962 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J85_RS16290 (C4J85_3273) - 3544966..3546324 (-) 1359 WP_124410215.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=280268 C4J85_RS16275 WP_122676958.1 3541341..3541976(-) (exbB) [Pseudomonas sp. R4-34-07]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280268 C4J85_RS16275 WP_122676958.1 3541341..3541976(-) (exbB) [Pseudomonas sp. R4-34-07]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTTACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAACTGCGCGCCAATTCGCCACTGGGTGAAATCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCAGCGCGGGTGATTCATGAGCTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATCCCGTCGGTGTTCTTCCATCGCTTTTTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment