Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4K02_RS17060 Genome accession   NZ_CP027755
Coordinates   3788253..3790478 (-) Length   741 a.a.
NCBI ID   WP_043046640.1    Uniprot ID   A0A0D0RX03
Organism   Pseudomonas synxantha strain 2-79     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3783253..3795478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K02_RS17025 (C4K02_3423) murB 3783622..3784641 (-) 1020 WP_043046649.1 UDP-N-acetylmuramate dehydrogenase -
  C4K02_RS17030 (C4K02_3424) - 3784638..3785102 (-) 465 WP_043046647.1 low molecular weight protein-tyrosine-phosphatase -
  C4K02_RS17035 (C4K02_3425) kdsB 3785102..3785866 (-) 765 WP_043046646.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K02_RS17040 (C4K02_3426) - 3785863..3786048 (-) 186 WP_003174668.1 Trm112 family protein -
  C4K02_RS17045 (C4K02_3427) lpxK 3786073..3787083 (-) 1011 WP_043046644.1 tetraacyldisaccharide 4'-kinase -
  C4K02_RS17050 (C4K02_3428) - 3787083..3787511 (-) 429 WP_043046643.1 biopolymer transporter ExbD -
  C4K02_RS17055 (C4K02_3429) exbB 3787508..3788143 (-) 636 WP_043046641.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K02_RS17060 (C4K02_3430) comA 3788253..3790478 (-) 2226 WP_043046640.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K02_RS17065 (C4K02_3431) - 3790614..3791129 (+) 516 WP_043046639.1 DUF2062 domain-containing protein -
  C4K02_RS17070 (C4K02_3432) - 3791134..3792492 (-) 1359 WP_043046638.1 sensor histidine kinase -
  C4K02_RS17075 (C4K02_3433) - 3792479..3793207 (-) 729 WP_043046636.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80340.26 Da        Isoelectric Point: 10.6997

>NTDB_id=280148 C4K02_RS17060 WP_043046640.1 3788253..3790478(-) (comA) [Pseudomonas synxantha strain 2-79]
MKTAMLALALGLLALRWLPALPPGAGVLAMLVLALMLLPFRTYPGAFFLFGLSWACISAQWALDDRLRPMLDGQTRWVEG
RVIGLPQQTGTSVRFELADSRSRTARLPKRIRVSWHGGPTVNSGERWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGATA
TVKDGERLTPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARYGCWPRTWPWLPWACGLAFAGALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLMLEPL
ASLQPGFWLSFAAVAALVLAFSGRLGPWSAWQVWTRPQWLIAIGLFPLLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLAGDGLLWLAGGALGGLFKGLALLAAQLPAWIPAEVPLGYWLVSLAGAVILLLPKGLPFRLLGWPMLLLAV
FPPRESIPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGPVDQGARVVLPSLKKFGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPGFLGTQPYNSGERWEWDGVAFELWQWAGASDGNPRSCVLQVEANGERLLLTGDIDRAAE
RAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPASVLISRGRSNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLRL
GTFLLPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=280148 C4K02_RS17060 WP_043046640.1 3788253..3790478(-) (comA) [Pseudomonas synxantha strain 2-79]
ATGAAAACAGCGATGTTGGCCTTGGCGCTGGGGTTACTGGCGTTGCGTTGGTTACCTGCGTTGCCGCCCGGCGCAGGGGT
GTTGGCCATGTTGGTGCTGGCGTTGATGCTGCTGCCTTTTCGCACCTATCCCGGGGCGTTCTTTCTGTTTGGTTTGAGTT
GGGCCTGTATCAGTGCGCAGTGGGCGCTGGATGACCGCTTGCGCCCGATGCTGGATGGGCAGACGCGCTGGGTCGAAGGG
CGTGTCATCGGCCTGCCGCAGCAGACGGGCACAAGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGGCT
GCCCAAGCGCATTCGCGTGTCCTGGCACGGCGGGCCCACGGTTAACAGCGGGGAGCGCTGGCGCTTGGCATTGACGCTGA
AGCGGCCTGCCGGCCTGCTTAATTTCCACGGGTTTGACCATGAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCCACTGCG
ACGGTAAAGGACGGCGAGCGCCTGACGCCGGCCCGCAATGCCTGGCGCGACGCTGTCCGCCAGCGCCTGATGGCCGTGGA
TGCCCAGGGCCGCGAGGCGGGCTTGGCTGCATTGGTACTGGGCGACGGTTCCGGGCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATTGGCCTGCTGGCGGGGTTGATCTACGGCTTG
ATCGCTTTGTTGGCGCGCTATGGGTGCTGGCCCCGAACCTGGCCGTGGCTGCCATGGGCGTGCGGCCTGGCATTTGCCGG
GGCGTTGGCTTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCTTGCGTCATGGTGGGGTTGGTGTTGCTGT
GGCGTTTGCGCTTTCGTCACTTGGGTGTGTGGTGGCCGTTGTTGCTGGCGCTGAACGCTGTGCTGATGCTTGAGCCCCTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCAGCGCTGGTCCTGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGCGCCTGGCAGGTCTGGACGCGTCCCCAGTGGTTGATCGCCATTGGCTTGTTCCCGCTGTTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGTGCACCCGTGGCCAACCTGGTTGCCGTGCCATGGATCAGCCTGGTGGTTCTTCCCTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGCCGGCGACGGTTTGCTGTGGTTGGCCGGTGGTGCGCTGGGCGGCTTATT
CAAGGGCCTGGCGCTGTTGGCCGCGCAACTGCCGGCCTGGATCCCGGCCGAGGTGCCTCTGGGCTACTGGCTGGTGAGCC
TGGCCGGCGCAGTGATTTTGCTACTGCCCAAGGGCCTCCCGTTTCGGTTATTGGGCTGGCCCATGCTGTTGTTGGCGGTG
TTTCCACCCAGGGAGTCGATACCCCATGGGCAGGTGGACGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCGCTGATCCT
GCGCACCCGCCATCATTCCTTGCTCTATGACGCCGGGCCCCGGTCGGGGCCTGTCGACCAGGGGGCGCGGGTCGTATTGC
CGTCGTTGAAAAAGTTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCTGATGCCGATCATGCCGGCGGTGCG
GCGGCAGTGGCCCGGGGGCTGCCCGTCAAGCGCGTGGTGGGCGGTGAAACCGAAGGGCTGCCGGGGTTTCTCGGTACCCA
GCCTTATAACAGTGGCGAGCGGTGGGAATGGGATGGCGTGGCCTTTGAACTGTGGCAATGGGCCGGTGCAAGTGATGGCA
ATCCGAGATCCTGCGTACTGCAGGTCGAGGCGAATGGCGAACGCCTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAA
CGGGCATTCCTGGCCTCGCCGCTGGCGGTGCCCACCGATTGGTTGCAGGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCCTTCCTGCAGCGGCTGGCGCCGGCATCGGTGCTGATCTCCCGTGGGCGCAGCAATGCATTCGGCCATCCTCATC
CACAAGTAATGGAGCGCTATCAGGCCTTGGGCAGTCGGGTATATGACAGCGCTGAACAAGGCGCTGTGCGCCTGCGCCTG
GGAACGTTCCTTCTACCGACTGTTGCGCGCAGTCAACGCAGGTTCTGGCGAGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0RX03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.384

96.356

0.572
  comA Ralstonia pseudosolanacearum GMI1000

35.597

100

0.382

Multiple sequence alignment