Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K02_RS17055 Genome accession   NZ_CP027755
Coordinates   3787508..3788143 (-) Length   211 a.a.
NCBI ID   WP_043046641.1    Uniprot ID   A0A0D0SQV5
Organism   Pseudomonas synxantha strain 2-79     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3782508..3793143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K02_RS17020 (C4K02_3422) - 3782877..3783548 (+) 672 WP_043046651.1 Bax inhibitor-1/YccA family protein -
  C4K02_RS17025 (C4K02_3423) murB 3783622..3784641 (-) 1020 WP_043046649.1 UDP-N-acetylmuramate dehydrogenase -
  C4K02_RS17030 (C4K02_3424) - 3784638..3785102 (-) 465 WP_043046647.1 low molecular weight protein-tyrosine-phosphatase -
  C4K02_RS17035 (C4K02_3425) kdsB 3785102..3785866 (-) 765 WP_043046646.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K02_RS17040 (C4K02_3426) - 3785863..3786048 (-) 186 WP_003174668.1 Trm112 family protein -
  C4K02_RS17045 (C4K02_3427) lpxK 3786073..3787083 (-) 1011 WP_043046644.1 tetraacyldisaccharide 4'-kinase -
  C4K02_RS17050 (C4K02_3428) - 3787083..3787511 (-) 429 WP_043046643.1 biopolymer transporter ExbD -
  C4K02_RS17055 (C4K02_3429) exbB 3787508..3788143 (-) 636 WP_043046641.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K02_RS17060 (C4K02_3430) comA 3788253..3790478 (-) 2226 WP_043046640.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K02_RS17065 (C4K02_3431) - 3790614..3791129 (+) 516 WP_043046639.1 DUF2062 domain-containing protein -
  C4K02_RS17070 (C4K02_3432) - 3791134..3792492 (-) 1359 WP_043046638.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22864.07 Da        Isoelectric Point: 7.3615

>NTDB_id=280147 C4K02_RS17055 WP_043046641.1 3787508..3788143(-) (exbB) [Pseudomonas synxantha strain 2-79]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMATNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280147 C4K02_RS17055 WP_043046641.1 3787508..3788143(-) (exbB) [Pseudomonas synxantha strain 2-79]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCATTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGCAAAAACTCAAGGAACTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCTGCGCGGGTGATTCATGAGCTGGAGCGTTACAT
CAACGCTCTCGGCACCATCGCCGCCATGGCACCGCTGCTCGGCCTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCGCGGGCATGGCGACCAACGCAGCGGTACTCGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATTCCCGCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0SQV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872

Multiple sequence alignment