Detailed information NTG0279976

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K10_RS26495
• Genome accession: NZ_CP027747
• Coordinates: 5852815..5854143 (+)
• Length: 442 a.a.
• NCBI ID: WP_009050935.1
• Uniprot ID: A0AB33WW27
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain 66
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5847815..5859143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K10_RS26475 (C4K10_5362)	pgeF	5849314..5850039 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
C4K10_RS26480 (C4K10_5363)	rluD	5850036..5850998 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K10_RS26485 (C4K10_5364)	-	5851151..5852173 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K10_RS26490 (C4K10_5365)	-	5852308..5852541 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K10_RS26495 (C4K10_5366)	pilR	5852815..5854143 (+)	1329	WP_009050935.1	sigma-54 dependent transcriptional regulator	Regulator
C4K10_RS26500 (C4K10_5367)	thiO	5854140..5855240 (-)	1101	WP_009050936.1	glycine oxidase ThiO	-
C4K10_RS26505 (C4K10_5368)	-	5855295..5855696 (-)	402	WP_009050937.1	type IV pilin protein	-
C4K10_RS26510 (C4K10_5369)	-	5855710..5858778 (-)	3069	WP_041987307.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48853.37 Da
• Isoelectric Point: 9.3790

>NTDB_id=279976 C4K10_RS26495 WP_009050935.1 5852815..5854143(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
MSPQQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGALPKSIPPKPVTGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279976 C4K10_RS26495 WP_009050935.1 5852815..5854143(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
ATGAGCCCACAGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGTTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCACTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAGCTACTGAACGGCGCCCTGCCCAAATCGATACCACCGAAGCCTGTTACTGGCCCCTTGC
TGGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGCGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.366	100	0.665
pilR	Acinetobacter baumannii strain A118	43.562	100	0.459