Detailed information NTG0279897

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K20_RS26835
• Genome accession: NZ_CP027743
• Coordinates: 5948115..5948987 (+)
• Length: 290 a.a.
• NCBI ID: WP_124300536.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain CW2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5943115..5953987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K20_RS26820 (C4K20_5452)	-	5945470..5945826 (-)	357	WP_124300534.1	BON domain-containing protein	-
C4K20_RS26825 (C4K20_5453)	-	5946114..5946530 (-)	417	WP_009050907.1	pilin	-
C4K20_RS26830 (C4K20_5454)	pilC	5946895..5948112 (+)	1218	WP_124300535.1	type II secretion system F family protein	Machinery gene
C4K20_RS26835 (C4K20_5455)	pilD	5948115..5948987 (+)	873	WP_124300536.1	A24 family peptidase	Machinery gene
C4K20_RS26840 (C4K20_5456)	coaE	5948984..5949607 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
C4K20_RS26845 (C4K20_5457)	yacG	5949604..5949807 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K20_RS26850 (C4K20_5458)	-	5949812..5950027 (-)	216	WP_009050911.1	hypothetical protein	-
C4K20_RS26855 (C4K20_5459)	-	5950093..5950782 (-)	690	WP_038575688.1	energy-coupling factor ABC transporter permease	-
C4K20_RS26860 (C4K20_5460)	-	5950779..5951246 (-)	468	WP_016703672.1	hypothetical protein	-
C4K20_RS26865 (C4K20_5461)	-	5951701..5953137 (+)	1437	WP_124300537.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32152.31 Da
• Isoelectric Point: 7.7039

>NTDB_id=279897 C4K20_RS26835 WP_124300536.1 5948115..5948987(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAEPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITSSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279897 C4K20_RS26835 WP_124300536.1 5948115..5948987(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain CW2]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGACTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGATTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGAGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCACATTCGATCCGA
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAACTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCAGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	97.931	0.521
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	50.909	94.828	0.483
pilD	Acinetobacter nosocomialis M2	50.182	94.828	0.476
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452