Detailed information NTG0279871

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K21_RS27130
• Genome accession: NZ_CP027742
• Coordinates: 6022488..6023816 (+)
• Length: 442 a.a.
• NCBI ID: WP_124335570.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain 464
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6017488..6028816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K21_RS27110 (C4K21_5527)	pgeF	6018987..6019712 (-)	726	WP_038575648.1	peptidoglycan editing factor PgeF	-
C4K21_RS27115 (C4K21_5528)	rluD	6019709..6020671 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K21_RS27120 (C4K21_5529)	-	6020824..6021846 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K21_RS27125 (C4K21_5530)	-	6021981..6022214 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K21_RS27130 (C4K21_5531)	pilR	6022488..6023816 (+)	1329	WP_124335570.1	sigma-54 dependent transcriptional regulator	Regulator
C4K21_RS27135 (C4K21_5532)	thiO	6023813..6024913 (-)	1101	WP_124335571.1	glycine oxidase ThiO	-
C4K21_RS27140 (C4K21_5533)	-	6024968..6025369 (-)	402	WP_038575642.1	type IV pilin protein	-
C4K21_RS27145 (C4K21_5534)	-	6025383..6028454 (-)	3072	WP_124335572.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48801.22 Da
• Isoelectric Point: 8.4012

>NTDB_id=279871 C4K21_RS27130 WP_124335570.1 6022488..6023816(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain 464]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPGSTPANPATGPLLGDSTAMHKLRVQIDKLAQSQASIYIS
GESGSGKELVARTIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=279871 C4K21_RS27130 WP_124335570.1 6022488..6023816(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain 464]
ATGGGTCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGTCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCGTGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTACGATCCACGACCAAGGACCACGGGCCGGCCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAGTTGGCGGTGCCGCCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAATGGCCAACAATTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	44.009	100	0.457