Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K31_RS08955 Genome accession   NZ_CP027738
Coordinates   1960919..1961554 (+) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis subsp. piscium strain ChPhzS135     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955919..1966554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K31_RS08935 (C4K31_1805) - 1956165..1957097 (+) 933 WP_025804356.1 ABC transporter ATP-binding protein -
  C4K31_RS08940 (C4K31_1806) - 1957094..1957873 (+) 780 WP_124302555.1 ABC transporter permease -
  C4K31_RS08945 (C4K31_1807) - 1957922..1958437 (-) 516 WP_124302556.1 DUF2062 domain-containing protein -
  C4K31_RS08950 (C4K31_1808) comA 1958585..1960816 (+) 2232 WP_106696835.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K31_RS08955 (C4K31_1809) exbB 1960919..1961554 (+) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K31_RS08960 (C4K31_1810) - 1961551..1961979 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  C4K31_RS08965 (C4K31_1811) lpxK 1961979..1962989 (+) 1011 WP_025804352.1 tetraacyldisaccharide 4'-kinase -
  C4K31_RS08970 (C4K31_1812) - 1963013..1963198 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K31_RS08975 (C4K31_1813) kdsB 1963195..1963959 (+) 765 WP_124302557.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K31_RS08980 (C4K31_1814) - 1963959..1964423 (+) 465 WP_124302558.1 low molecular weight protein-tyrosine-phosphatase -
  C4K31_RS08985 (C4K31_1815) murB 1964420..1965439 (+) 1020 WP_025804350.1 UDP-N-acetylmuramate dehydrogenase -
  C4K31_RS08990 (C4K31_1816) - 1965693..1966163 (+) 471 WP_025804349.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=279753 C4K31_RS08955 WP_025804353.1 1960919..1961554(+) (exbB) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS135]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279753 C4K31_RS08955 WP_025804353.1 1960919..1961554(+) (exbB) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS135]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTATGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCCCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCGGCTGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACTATTGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment