Detailed information NTG0279752

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K31_RS08950
• Genome accession: NZ_CP027738
• Coordinates: 1958585..1960816 (+)
• Length: 743 a.a.
• NCBI ID: WP_106696835.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ChPhzS135
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1953585..1965816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K31_RS08925 (C4K31_1803)	-	1954707..1955366 (+)	660	WP_124302553.1	transglutaminase-like domain-containing protein	-
C4K31_RS08930 (C4K31_1804)	-	1955409..1956032 (+)	624	WP_124302554.1	glutathione S-transferase family protein	-
C4K31_RS08935 (C4K31_1805)	-	1956165..1957097 (+)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
C4K31_RS08940 (C4K31_1806)	-	1957094..1957873 (+)	780	WP_124302555.1	ABC transporter permease	-
C4K31_RS08945 (C4K31_1807)	-	1957922..1958437 (-)	516	WP_124302556.1	DUF2062 domain-containing protein	-
C4K31_RS08950 (C4K31_1808)	comA	1958585..1960816 (+)	2232	WP_106696835.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K31_RS08955 (C4K31_1809)	exbB	1960919..1961554 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K31_RS08960 (C4K31_1810)	-	1961551..1961979 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
C4K31_RS08965 (C4K31_1811)	lpxK	1961979..1962989 (+)	1011	WP_025804352.1	tetraacyldisaccharide 4'-kinase	-
C4K31_RS08970 (C4K31_1812)	-	1963013..1963198 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K31_RS08975 (C4K31_1813)	kdsB	1963195..1963959 (+)	765	WP_124302557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K31_RS08980 (C4K31_1814)	-	1963959..1964423 (+)	465	WP_124302558.1	low molecular weight protein-tyrosine-phosphatase	-
C4K31_RS08985 (C4K31_1815)	murB	1964420..1965439 (+)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81421.57 Da
• Isoelectric Point: 10.0461

>NTDB_id=279752 C4K31_RS08950 WP_106696835.1 1958585..1960816(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS135]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWVLDDRLAEPLDGQTRWLEG
RVVGLPQQAEGVVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAAMQESWRARIRQRLLQVDSHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGDRVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSLALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279752 C4K31_RS08950 WP_106696835.1 1958585..1960816(+) (comA) [Pseudomonas chlororaphis subsp. piscium strain ChPhzS135]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGTGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCGTGGTGCGTTTCGAGCTGGAAGGCGGACGGGCGCGGCGCGGACGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGG
ACGGTCAAGGATGGGCAGCTTCTGGCCGCCATGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TTCCCATGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGTCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCCTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTAGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGACTCCGACCTGGGCGACCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCTGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCGCTGCGGTTGATGCTG
GGCACATACGCCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624