Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J88_RS16115 Genome accession   NZ_CP027733
Coordinates   3487362..3489587 (-) Length   741 a.a.
NCBI ID   WP_124407539.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-39-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3482362..3494587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J88_RS16080 (C4J88_3234) murB 3482731..3483750 (-) 1020 WP_124407535.1 UDP-N-acetylmuramate dehydrogenase -
  C4J88_RS16085 (C4J88_3235) - 3483747..3484211 (-) 465 WP_124407536.1 low molecular weight protein-tyrosine-phosphatase -
  C4J88_RS16090 (C4J88_3236) kdsB 3484211..3484975 (-) 765 WP_124407537.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J88_RS16095 (C4J88_3237) - 3484972..3485157 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J88_RS16100 (C4J88_3238) lpxK 3485182..3486192 (-) 1011 WP_124407538.1 tetraacyldisaccharide 4'-kinase -
  C4J88_RS16105 (C4J88_3239) - 3486192..3486620 (-) 429 WP_124367383.1 biopolymer transporter ExbD -
  C4J88_RS16110 (C4J88_3240) exbB 3486617..3487252 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J88_RS16115 (C4J88_3241) comA 3487362..3489587 (-) 2226 WP_124407539.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J88_RS16120 (C4J88_3242) - 3489723..3490238 (+) 516 WP_124407540.1 DUF2062 domain-containing protein -
  C4J88_RS16125 (C4J88_3243) - 3490242..3491600 (-) 1359 WP_124407541.1 sensor histidine kinase -
  C4J88_RS16130 (C4J88_3244) - 3491587..3492315 (-) 729 WP_124367386.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80495.54 Da        Isoelectric Point: 10.8211

>NTDB_id=279626 C4J88_RS16115 WP_124407539.1 3487362..3489587(-) (comA) [Pseudomonas sp. R4-39-08]
MRTGMFALALGLLTLRFLPALPPTGWLLAMLVLALMLVPFRTYPLAFFLMGLSWACISAQWALDDRLRPALDGETRCVEG
RVVGLPQQTDTGVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLTPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRTEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFIAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWFKGLTLLAVQLPAWTPAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQAVILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAVARGLPIRRVVGGETDGLPAFLGTEPCISGERWEWDGVSFVLWQWSGAISGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279626 C4J88_RS16115 WP_124407539.1 3487362..3489587(-) (comA) [Pseudomonas sp. R4-39-08]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGTTGCTGACCCTGCGTTTTCTACCGGCGTTGCCGCCGACCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTAGTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGATGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAGCACTGGACGGCGAAACACGATGTGTGGAAGGG
CGCGTCGTCGGCTTGCCTCAGCAGACCGACACCGGCGTGCGTTTTGACCTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGCGGGCCGCCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCTGGCCTGCTCAACTTTCACGGTTTCGACCACGAGGCCTGGTTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTGAAAGACGGTGAGCGCCTGACGCCAGCCCGCAACGCCCTGCGCGACAGCCTGCGCCAGCGCCTGATGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTGCGCACGGAGCAATGGCAGGTAT
TGCAAGACACCGGCACCGTGCACCTGTTGGTTATCTCCGGCCAACACATTGGCTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATTGC
AGCGCTGGGTTATGGCCTGCTGGCGGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCCCTG
GCCAGTCTGCAGCCGGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGGCGGCTCGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCACAGTGGTTGATTGCCATCGGTTTGTTTCCGGTCCTGTTGGTGCTGGGTT
TACCCATCAGCCTCACCGCGCCTGTGGCCAATTTATTCGCTGTGCCGTGGATCAGTCTGGTGGTGTTGCCATTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTGTGGTTGGCCGGCGGAGCGCTGGAGGGATGGTT
CAAGGGGCTGACCCTGCTGGCCGTGCAGTTGCCGGCCTGGACGCCGGCCGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGTGTTATTGCTGCTGCCCAAGGGCGTGCCATTTCGGTTGCTGGGCTGGCCCATGCTGCTGTTGGCGGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTGACGGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCTGTGATCTT
GCGCACCCGCAACCACGCCTTGCTTTACGACGCGGGGCCGCGTTCGGGGGCGGTCGACCTGGGCGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGCTGCTACTGAGCCATGCCGACGCCGATCATGCTGGTGGCGCT
GCAGCTGTCGCCCGCGGGCTGCCCATCCGGCGTGTGGTCGGCGGCGAAACCGACGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTATCAGTGGCGAACGATGGGAGTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCCGGCGCCATCAGTGGCA
ACGCCAAATCCTGTGTGTTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGGGATATCGACCGTGCGGCGGAG
CGCGCACTGCTTGACACACCGTTGGCGGTGCCCACCGATTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCTTTTGTGCAACGGCTTGCGCCTGGATCGGTGCTGATCTCCAGAGGCCGTGGCAATGCCTTTGGTCATCCTCATT
CGCAAGTGGTAGAACGCTATCGGGCCCTGGGCAGCCGGCTATACGACAGCGCCGAACAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCTGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.11

97.031

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.272

100

0.377

Multiple sequence alignment