Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J88_RS16110 Genome accession   NZ_CP027733
Coordinates   3486617..3487252 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-39-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3481617..3492252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J88_RS16075 (C4J88_3233) - 3481990..3482661 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  C4J88_RS16080 (C4J88_3234) murB 3482731..3483750 (-) 1020 WP_124407535.1 UDP-N-acetylmuramate dehydrogenase -
  C4J88_RS16085 (C4J88_3235) - 3483747..3484211 (-) 465 WP_124407536.1 low molecular weight protein-tyrosine-phosphatase -
  C4J88_RS16090 (C4J88_3236) kdsB 3484211..3484975 (-) 765 WP_124407537.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J88_RS16095 (C4J88_3237) - 3484972..3485157 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J88_RS16100 (C4J88_3238) lpxK 3485182..3486192 (-) 1011 WP_124407538.1 tetraacyldisaccharide 4'-kinase -
  C4J88_RS16105 (C4J88_3239) - 3486192..3486620 (-) 429 WP_124367383.1 biopolymer transporter ExbD -
  C4J88_RS16110 (C4J88_3240) exbB 3486617..3487252 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J88_RS16115 (C4J88_3241) comA 3487362..3489587 (-) 2226 WP_124407539.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J88_RS16120 (C4J88_3242) - 3489723..3490238 (+) 516 WP_124407540.1 DUF2062 domain-containing protein -
  C4J88_RS16125 (C4J88_3243) - 3490242..3491600 (-) 1359 WP_124407541.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=279625 C4J88_RS16110 WP_122676958.1 3486617..3487252(-) (exbB) [Pseudomonas sp. R4-39-08]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279625 C4J88_RS16110 WP_122676958.1 3486617..3487252(-) (exbB) [Pseudomonas sp. R4-39-08]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTTACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAACTGCGCGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCAGCGCGAGTGATCCATGAGCTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATCCCGTCGGTGTTCTTCCATCGCTTTTTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment