Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J89_RS15705 Genome accession   NZ_CP027732
Coordinates   3450045..3452270 (-) Length   741 a.a.
NCBI ID   WP_124414954.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-35-07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3445045..3457270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J89_RS15670 (C4J89_3161) murB 3445415..3446434 (-) 1020 WP_124414953.1 UDP-N-acetylmuramate dehydrogenase -
  C4J89_RS15675 (C4J89_3162) - 3446431..3446895 (-) 465 WP_124367380.1 low molecular weight protein-tyrosine-phosphatase -
  C4J89_RS15680 (C4J89_3163) kdsB 3446895..3447659 (-) 765 WP_124363254.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J89_RS15685 (C4J89_3164) - 3447656..3447841 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J89_RS15690 (C4J89_3165) lpxK 3447865..3448875 (-) 1011 WP_124371042.1 tetraacyldisaccharide 4'-kinase -
  C4J89_RS15695 (C4J89_3166) - 3448875..3449303 (-) 429 WP_124363256.1 biopolymer transporter ExbD -
  C4J89_RS15700 (C4J89_3167) exbB 3449300..3449935 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J89_RS15705 (C4J89_3168) comA 3450045..3452270 (-) 2226 WP_124414954.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J89_RS15710 (C4J89_3169) - 3452406..3452921 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J89_RS15715 (C4J89_3170) - 3452925..3454283 (-) 1359 WP_124414955.1 sensor histidine kinase -
  C4J89_RS15720 (C4J89_3171) - 3454270..3454998 (-) 729 WP_124414956.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80599.66 Da        Isoelectric Point: 10.9112

>NTDB_id=279601 C4J89_RS15705 WP_124414954.1 3450045..3452270(-) (comA) [Pseudomonas sp. R4-35-07]
MRTGMFALALGLLTLRFLPVLPPIGWLLAMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGETRWVEG
RVVGLPQQTDTGVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGQRLTPARNALRDSLRQRLLAADAQTHEAAVAALVLGDGSGLRAEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFMAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLSLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWFKGLTLLAGQLPAWTPAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQAVILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAVARGLPIRRVVGGETEGLPAFLGTEPCVSGERWEWDGVSFVLWQWSDALGGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279601 C4J89_RS15705 WP_124414954.1 3450045..3452270(-) (comA) [Pseudomonas sp. R4-35-07]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGCTGCTGACCCTGCGTTTTCTACCGGTGTTGCCGCCCATCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTATTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAGCACTGGACGGCGAAACACGATGGGTGGAAGGG
CGCGTGGTCGGCTTGCCCCAGCAGACCGACACCGGCGTGCGTTTTGATCTGGCCGACAGCCGGTCGCGCAAAGCTCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGTGGGCCGCCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCCGGCCTGCTCAATTTTCACGGTTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGCGCCACGGGT
TCGGTAAAAGACGGTCAGCGCCTGACTCCGGCCCGCAACGCCCTGCGCGACAGCCTGCGCCAGCGCCTGCTGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTAGGTGACGGTTCCGGGCTGCGCGCGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTCATTTCCGGCCAACACATTGGCTTGTTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATGGC
AGCGCTAGGTTATGGCCTGCTGGCAGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCTCTG
GCCAGTTTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGGCGGCTGGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCACAGTGGTTGATTGCTATCGGTTTGTTTCCGGTCCTGTTGGTGCTGAGTT
TACCCATCAGCCTCACCGCGCCTGTGGCCAATTTATTCGCCGTGCCGTGGATCAGTCTGGTGGTGTTGCCATTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTCTGGTTGGCCGGCGGAGCGCTGGAGGGATGGTT
CAAGGGGCTGACCCTGCTGGCCGGGCAGTTGCCGGCCTGGACGCCGGCCGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGTGTTATTGCTGCTGCCCAAGGGCGTGCCATTTCGGTTGCTGGGCTGGCCCATGCTGCTGTTGGCGGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTGACGGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCTGTGATCTT
GCGCACCCGCAACCATGCCTTGCTTTACGATGCGGGGCCGCGTTCGGGGGCGGTCGACCTGGGCGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGCTGCTATTGAGCCATGCCGACGCCGATCATGCCGGTGGCGCT
GCAGCTGTCGCCCGTGGGCTGCCCATCCGGCGCGTGGTTGGCGGTGAAACCGAAGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTGTCAGTGGCGAACGATGGGAGTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCTGACGCCCTCGGTGGCA
ACGCCAAATCCTGTGTATTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGAGATATCGACCGTGCGGCGGAG
CGCGCACTGCTTGACACACCATTGGCGGTGCCCACTGACTGGTTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCCTTTGTGCAACGGCTTGCGCCTGGATCGGTGCTGATCTCCAGAGGCCGGGGCAATGCCTTTGGTCATCCTCATT
CGCAGGTGGTGGAACGCTATCGGGCCCTGGGCAGCCGGTTATACGACAGCGCCGAGCAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCTGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.031

0.576
  comA Ralstonia pseudosolanacearum GMI1000

35.66

100

0.379

Multiple sequence alignment