Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   D9C16_RS05385 Genome accession   NZ_CP032861
Coordinates   951826..952275 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 946826..957275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS05355 (D9C16_05355) sepM 946905..947930 (-) 1026 WP_003245451.1 protease DdcP Regulator
  D9C16_RS05360 (D9C16_05360) ylbK 947932..948714 (-) 783 WP_003232221.1 patatin family protein -
  D9C16_RS05365 (D9C16_05365) spoVV 948895..950121 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  D9C16_RS05370 (D9C16_05370) coaD 950132..950617 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D9C16_RS05375 (D9C16_05375) rsmD 950622..951176 (-) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D9C16_RS05380 (D9C16_05380) ylbG 951499..951771 (-) 273 WP_009967171.1 YlbG family protein -
  D9C16_RS05385 (D9C16_05385) ylbF 951826..952275 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D9C16_RS05390 (D9C16_05390) ylbE 952391..952630 (-) 240 WP_003232231.1 YlbE-like family protein -
  D9C16_RS05395 (D9C16_05395) ylbD 952646..953044 (-) 399 WP_003232233.1 YlbD family protein -
  D9C16_RS05400 (D9C16_05400) ylbC 953276..954316 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  D9C16_RS05405 (D9C16_05405) ylbB 954400..954846 (-) 447 WP_003221362.1 CBS domain-containing protein -
  D9C16_RS05410 (D9C16_05410) ylbA 954986..955348 (+) 363 WP_014479712.1 YugN family protein -
  D9C16_RS05415 (D9C16_05415) ctaG 955380..956273 (-) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  D9C16_RS05420 (D9C16_05420) ctaF 956301..956633 (-) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  D9C16_RS05425 (D9C16_05425) ctaE 956636..957259 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=279601 D9C16_RS05385 WP_003221370.1 951826..952275(-) (ylbF) [Bacillus subtilis subsp. subtilis strain N1-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=279601 D9C16_RS05385 WP_003221370.1 951826..952275(-) (ylbF) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment