Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J89_RS15700 Genome accession   NZ_CP027732
Coordinates   3449300..3449935 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas sp. R4-35-07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3444300..3454935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J89_RS15665 (C4J89_3160) - 3444672..3445343 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  C4J89_RS15670 (C4J89_3161) murB 3445415..3446434 (-) 1020 WP_124414953.1 UDP-N-acetylmuramate dehydrogenase -
  C4J89_RS15675 (C4J89_3162) - 3446431..3446895 (-) 465 WP_124367380.1 low molecular weight protein-tyrosine-phosphatase -
  C4J89_RS15680 (C4J89_3163) kdsB 3446895..3447659 (-) 765 WP_124363254.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J89_RS15685 (C4J89_3164) - 3447656..3447841 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J89_RS15690 (C4J89_3165) lpxK 3447865..3448875 (-) 1011 WP_124371042.1 tetraacyldisaccharide 4'-kinase -
  C4J89_RS15695 (C4J89_3166) - 3448875..3449303 (-) 429 WP_124363256.1 biopolymer transporter ExbD -
  C4J89_RS15700 (C4J89_3167) exbB 3449300..3449935 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J89_RS15705 (C4J89_3168) comA 3450045..3452270 (-) 2226 WP_124414954.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J89_RS15710 (C4J89_3169) - 3452406..3452921 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J89_RS15715 (C4J89_3170) - 3452925..3454283 (-) 1359 WP_124414955.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=279600 C4J89_RS15700 WP_122676958.1 3449300..3449935(-) (exbB) [Pseudomonas sp. R4-35-07]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279600 C4J89_RS15700 WP_122676958.1 3449300..3449935(-) (exbB) [Pseudomonas sp. R4-35-07]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAACTGCGCGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCAGCGCGGGTGATCCATGAGCTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment