Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J91_RS16155 Genome accession   NZ_CP027730
Coordinates   3547598..3549823 (-) Length   741 a.a.
NCBI ID   WP_124363257.1    Uniprot ID   -
Organism   Pseudomonas sp. R3-52-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3542598..3554823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J91_RS16120 (C4J91_3241) murB 3542968..3543987 (-) 1020 WP_124363252.1 UDP-N-acetylmuramate dehydrogenase -
  C4J91_RS16125 (C4J91_3242) - 3543984..3544448 (-) 465 WP_124363253.1 low molecular weight protein-tyrosine-phosphatase -
  C4J91_RS16130 (C4J91_3243) kdsB 3544448..3545212 (-) 765 WP_124363254.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J91_RS16135 (C4J91_3244) - 3545209..3545394 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J91_RS16140 (C4J91_3245) lpxK 3545418..3546428 (-) 1011 WP_124363255.1 tetraacyldisaccharide 4'-kinase -
  C4J91_RS16145 (C4J91_3246) - 3546428..3546856 (-) 429 WP_124363256.1 biopolymer transporter ExbD -
  C4J91_RS16150 (C4J91_3247) exbB 3546853..3547488 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J91_RS16155 (C4J91_3248) comA 3547598..3549823 (-) 2226 WP_124363257.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J91_RS16160 (C4J91_3249) - 3549959..3550474 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J91_RS16165 (C4J91_3250) - 3550478..3551692 (-) 1215 Protein_3181 histidine kinase sensor domain-containing protein -
  C4J91_RS16170 - 3551695..3551937 (-) 243 Protein_3182 response regulator -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80613.79 Da        Isoelectric Point: 10.9845

>NTDB_id=279552 C4J91_RS16155 WP_124363257.1 3547598..3549823(-) (comA) [Pseudomonas sp. R3-52-08]
MRTGMFALALGLLTLRFLPVLPPIGWLLAMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGETRWVEG
RVVGLPQQTETSVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGQRLAPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRADQWQVLQDTGTVHLLVISGHHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFMAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLSLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWFKGLILLAGQLPAWTPAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQAVILRTRNHALLYDAGPRSGAVDLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAIARGLPIRRVVGGETEGLPAFLGTEPCVSGERWDWDGVSFVLWQWSGAISGNAKSCVLQVQAKGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSKSFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279552 C4J91_RS16155 WP_124363257.1 3547598..3549823(-) (comA) [Pseudomonas sp. R3-52-08]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGCTGCTGACCCTGCGTTTTCTACCGGTGTTGCCGCCCATCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTATTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAGCACTGGACGGCGAAACACGATGGGTGGAAGGG
CGCGTGGTCGGCTTGCCTCAGCAGACCGAAACCAGCGTGCGTTTTGACCTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
ACCCAAGCGCATTCGGGTGTCCTGGCACGGCGGGCCGCCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCTGGCCTGCTCAATTTTCACGGTTTCGACCACGAGGCCTGGCTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTGAAAGACGGTCAGCGCCTCGCGCCAGCCCGCAACGCTCTGCGCGACAGCCTGCGCCAGCGCCTGATGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTGCGCGCGGATCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTCATTTCCGGCCACCACATTGGCTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATGGC
AGCGCTAGGTTATGGCCTGCTGGCAGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCTCTG
GCCAGTTTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGGCGGCTGGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCACAGTGGTTGATTGCTATCGGTTTGTTTCCGGTCCTGTTGGTGCTGAGTT
TACCCATCAGCCTCACCGCGCCTGTGGCCAATTTATTCGCCGTGCCGTGGATCAGTCTGGTGGTGTTGCCATTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTCTGGTTGGCCGGCGGAGCGCTGGAGGGATGGTT
CAAGGGGCTGATCCTGCTGGCCGGGCAGTTGCCGGCCTGGACGCCGGCCGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGTGTTATTGCTGCTGCCCAAGGGCGTGCCATTTCGGTTGCTGGGCTGGCCGATGCTGCTGTTGGCCGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTGACGGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCTGTGATCTT
GCGCACCCGCAACCATGCCTTGCTTTACGATGCGGGGCCGCGTTCGGGGGCGGTCGACCTGGGTGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGTTGCTACTGAGCCATGCCGACGCCGATCATGCCGGTGGCGCT
GCAGCTATCGCCCGTGGGCTGCCCATCCGGCGTGTGGTCGGCGGTGAAACCGAAGGGTTGCCCGCGTTTCTGGGGACCGA
GCCTTGTGTCAGTGGCGAACGATGGGACTGGGATGGTGTGTCGTTCGTGTTATGGCAGTGGTCCGGCGCCATCAGTGGCA
ACGCCAAATCCTGTGTGTTGCAGGTGCAGGCCAAGGGTGAACGGCTGCTGCTCACCGGGGATATCGACCGTGCGGCGGAG
CGCGCATTGCTTGACACACCGTTGGCGGTGCCCACTGACTGGTTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAAGTCCTTTGTGCAACGGCTTGCGCCTGGATCAGTGCTGATCTCCAGAGGCCGGGGCAATGCCTTTGGTCATCCTCATT
CGCAAGTGGTAGAACGCTATCGGGCCCTGGGCAGCCGGCTATACGACAGCGCCGAGCAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCCGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.031

0.576
  comA Ralstonia pseudosolanacearum GMI1000

35.406

100

0.377

Multiple sequence alignment