Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J91_RS16150 Genome accession   NZ_CP027730
Coordinates   3546853..3547488 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas sp. R3-52-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3541853..3552488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J91_RS16115 (C4J91_3240) - 3542227..3542898 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  C4J91_RS16120 (C4J91_3241) murB 3542968..3543987 (-) 1020 WP_124363252.1 UDP-N-acetylmuramate dehydrogenase -
  C4J91_RS16125 (C4J91_3242) - 3543984..3544448 (-) 465 WP_124363253.1 low molecular weight protein-tyrosine-phosphatase -
  C4J91_RS16130 (C4J91_3243) kdsB 3544448..3545212 (-) 765 WP_124363254.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J91_RS16135 (C4J91_3244) - 3545209..3545394 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J91_RS16140 (C4J91_3245) lpxK 3545418..3546428 (-) 1011 WP_124363255.1 tetraacyldisaccharide 4'-kinase -
  C4J91_RS16145 (C4J91_3246) - 3546428..3546856 (-) 429 WP_124363256.1 biopolymer transporter ExbD -
  C4J91_RS16150 (C4J91_3247) exbB 3546853..3547488 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J91_RS16155 (C4J91_3248) comA 3547598..3549823 (-) 2226 WP_124363257.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J91_RS16160 (C4J91_3249) - 3549959..3550474 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J91_RS16165 (C4J91_3250) - 3550478..3551692 (-) 1215 Protein_3181 histidine kinase sensor domain-containing protein -
  C4J91_RS16170 - 3551695..3551937 (-) 243 Protein_3182 response regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=279551 C4J91_RS16150 WP_122676958.1 3546853..3547488(-) (exbB) [Pseudomonas sp. R3-52-08]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279551 C4J91_RS16150 WP_122676958.1 3546853..3547488(-) (exbB) [Pseudomonas sp. R3-52-08]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAACTGCGCGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCAGCGCGGGTGATCCATGAGCTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment