Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J93_RS15815 Genome accession   NZ_CP027728
Coordinates   3433336..3435561 (-) Length   741 a.a.
NCBI ID   WP_124429875.1    Uniprot ID   -
Organism   Pseudomonas sp. R2-37-08W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3428336..3440561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J93_RS15780 (C4J93_3158) murB 3428705..3429724 (-) 1020 WP_124429870.1 UDP-N-acetylmuramate dehydrogenase -
  C4J93_RS15785 (C4J93_3159) - 3429721..3430185 (-) 465 WP_124429871.1 low molecular weight protein-tyrosine-phosphatase -
  C4J93_RS15790 (C4J93_3160) kdsB 3430185..3430949 (-) 765 WP_124429872.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J93_RS15795 (C4J93_3161) - 3430946..3431131 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J93_RS15800 (C4J93_3162) lpxK 3431156..3432166 (-) 1011 WP_124429873.1 tetraacyldisaccharide 4'-kinase -
  C4J93_RS15805 (C4J93_3163) - 3432166..3432594 (-) 429 WP_124429874.1 biopolymer transporter ExbD -
  C4J93_RS15810 (C4J93_3164) exbB 3432591..3433226 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J93_RS15815 (C4J93_3165) comA 3433336..3435561 (-) 2226 WP_124429875.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J93_RS15820 (C4J93_3166) - 3435697..3436212 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J93_RS15825 (C4J93_3167) - 3436216..3437574 (-) 1359 WP_124429876.1 sensor histidine kinase -
  C4J93_RS15830 (C4J93_3168) - 3437561..3438289 (-) 729 WP_124371046.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80647.72 Da        Isoelectric Point: 10.9112

>NTDB_id=279504 C4J93_RS15815 WP_124429875.1 3433336..3435561(-) (comA) [Pseudomonas sp. R2-37-08W]
MRTGMFALALGLLTLRFLPVLPPIGWLLAMLVLALMLVPFRTYPLAFFLLGLSWACISAQWALDDRLRPTLDGETRWVEG
RVVGLPQQTDTSVRFDLADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGQRLTPARNALRDSLRQRLMAADAQTHEAAVAALVLGDGSGLRTEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYGCWPRNLPWLPWACGLAFMAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPLAGDGLLWLAGGALEGWFKGLTLLAVQLPAWTPAEVPLVYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPKESVPHGQVTVVQLDVGQGQAVILRTRNHALLYDAGPRAGAADLGARVVLPSLKKFGVERLDMLLLSHADADHAGGA
AAIARGLPIRRVVGGETEGLPAFLGTEPCVSGERWEWDGVSFVLWQWSDALGGNAKSCVLQVQASGERLLLTGDIDRAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPGSVLISRGRGNAFGHPHSQVVERYRALGSRLYDSAEQGAVRLQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279504 C4J93_RS15815 WP_124429875.1 3433336..3435561(-) (comA) [Pseudomonas sp. R2-37-08W]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGCTGCTGACCCTGCGTTTTCTACCGGTGTTGCCGCCCATCGGATGGCT
GTTGGCCATGCTGGTGCTGGCATTGATGTTAGTGCCGTTTCGTACCTATCCGCTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCGACCAACACTGGACGGCGAAACGCGATGGGTGGAAGGG
CGTGTGGTCGGCTTGCCTCAGCAGACCGACACCAGCGTGCGTTTTGACCTGGCCGACAGCCGGTCGCGCAAAGCCCGGCT
ACCCAAGCGCATCCGGGTGTCCTGGCACGGCGGGCCACCGGTGCGCAGTGGAGAACGCTGGCGCCTGGCTGTCACCCTCA
AGCGGCCGTCCGGCCTGCTCAATTTTCACGGTTTCGATCACGAGGCCTGGCTGCTGGCGCAACGCATCGGCGCCACGGGC
TCGGTAAAAGACGGTCAGCGCCTGACGCCGGCCCGCAACGCCCTGCGCGATAGCCTGCGCCAGCGCCTGATGGCTGCGGA
TGCGCAAACCCATGAAGCCGCCGTGGCGGCGTTGGTGCTGGGTGATGGTTCCGGGCTGCGCACGGAGCAATGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTCATTTCCGGCCAACACATTGGTTTGCTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCGCGTTACGGTTGCTGGCCACGCAACCTGCCATGGCTGCCGTGGGCCTGCGGCCTGGCCTTTATGGC
AGCGCTGGGTTATGGCCTGCTGGCGGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTGATGGTGGGCCTGGTATTGCTAT
GGCGGCTGCGCTTTCGGCATTTGGGCGCGTGGTGGCCGTTGCTGCTGGCCTTCAACGCTGTGCTGCTGCTTGAGCCCCTG
GCCAGTTTGCAGCCGGGTTTCTGGTTGTCCTTTGCGGCGGTTGCGATCCTGGTGCTGACGTTCGGCGGGCGGCTCGGGCC
CTGGAGTGTCTGGCAGGCCTGGACGCGTCCACAGTGGTTGATTGCCATCGGTTTGTTTCCGGTCCTGTTGGTGCTGGGTT
TACCCATCAGCCTCACCGCGCCTGTGGCCAATTTATTCGCTGTGCCGTGGATCAGTCTGGTGGTGTTGCCATTGGCGTTG
CTGGGCACGGCGCTGCTGTGGCTGCCGTTGGCCGGTGACGGTTTGCTGTGGTTGGCCGGCGGAGCGCTGGAGGGATGGTT
CAAGGGGCTGACCCTGCTGGCCGTGCAGTTGCCGGCCTGGACGCCGGCCGAGGTGCCGCTGGTTTATTGGCTGGTCAGCC
TGGCGGGCGCGGTGTTATTGCTGCTGCCCAAGGGCGTGCCATTTCGGTTGCTGGGCTGGCCGATGCTGCTGTTGGCCGTG
TTTCCACCCAAGGAATCGGTACCCCATGGGCAGGTGACGGTGGTGCAACTGGATGTCGGCCAGGGGCAGGCTGTGATCTT
GCGCACCCGCAACCACGCCTTGCTTTACGACGCGGGGCCGCGTGCGGGGGCGGCCGACCTGGGCGCGCGCGTGGTTCTGC
CGTCGTTGAAAAAGTTCGGAGTAGAGCGGTTGGACATGCTGCTACTGAGCCATGCCGACGCCGATCATGCCGGTGGCGCT
GCAGCTATCGCCCGTGGGCTGCCCATCCGGCGTGTGGTTGGCGGTGAAACCGAAGGGTTGCCGGCGTTTCTGGGGACCGA
GCCTTGTGTCAGTGGCGAACGATGGGAGTGGGATGGTGTGTCCTTCGTGTTATGGCAGTGGTCTGACGCCCTCGGTGGCA
ACGCCAAATCCTGTGTATTGCAGGTGCAGGCCAGCGGTGAGCGGCTGCTGCTCACCGGGGATATCGACCGTGCGGCGGAG
CGCGCACTGCTTGACACACCATTGGCGGTGCCCACCGATTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCTTTTGTGCAACGGCTTGCGCCCGGATCGGTGCTGATCTCCAGAGGCCGGGGCAATGCCTTTGGTCATCCTCATT
CGCAAGTGGTAGAACGCTATCGGGCCCTGGGCAGCCGGCTATACGACAGCGCCGAGCAAGGTGCCGTGCGTCTTCAGTTG
GGCGCGTTCCAACCCGCCGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-670)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.031

0.575
  comA Ralstonia pseudosolanacearum GMI1000

35.398

100

0.378

Multiple sequence alignment