Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J93_RS15810 Genome accession   NZ_CP027728
Coordinates   3432591..3433226 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas sp. R2-37-08W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427591..3438226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J93_RS15775 (C4J93_3157) - 3427962..3428633 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  C4J93_RS15780 (C4J93_3158) murB 3428705..3429724 (-) 1020 WP_124429870.1 UDP-N-acetylmuramate dehydrogenase -
  C4J93_RS15785 (C4J93_3159) - 3429721..3430185 (-) 465 WP_124429871.1 low molecular weight protein-tyrosine-phosphatase -
  C4J93_RS15790 (C4J93_3160) kdsB 3430185..3430949 (-) 765 WP_124429872.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J93_RS15795 (C4J93_3161) - 3430946..3431131 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J93_RS15800 (C4J93_3162) lpxK 3431156..3432166 (-) 1011 WP_124429873.1 tetraacyldisaccharide 4'-kinase -
  C4J93_RS15805 (C4J93_3163) - 3432166..3432594 (-) 429 WP_124429874.1 biopolymer transporter ExbD -
  C4J93_RS15810 (C4J93_3164) exbB 3432591..3433226 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J93_RS15815 (C4J93_3165) comA 3433336..3435561 (-) 2226 WP_124429875.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J93_RS15820 (C4J93_3166) - 3435697..3436212 (+) 516 WP_124363258.1 DUF2062 domain-containing protein -
  C4J93_RS15825 (C4J93_3167) - 3436216..3437574 (-) 1359 WP_124429876.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=279503 C4J93_RS15810 WP_122676958.1 3432591..3433226(-) (exbB) [Pseudomonas sp. R2-37-08W]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279503 C4J93_RS15810 WP_122676958.1 3432591..3433226(-) (exbB) [Pseudomonas sp. R2-37-08W]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAACTGCGCGCCAATTCGCCACTGGGTGAAATCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCAGCGCGAGTGATCCATGAGCTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACCACGGCT
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment