Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J94_RS16115 Genome accession   NZ_CP027727
Coordinates   3534888..3537113 (-) Length   741 a.a.
NCBI ID   WP_256657539.1    Uniprot ID   -
Organism   Pseudomonas sp. R5-89-07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529888..3542113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J94_RS16080 (C4J94_3226) murB 3530257..3531276 (-) 1020 WP_124387090.1 UDP-N-acetylmuramate dehydrogenase -
  C4J94_RS16085 (C4J94_3227) - 3531273..3531737 (-) 465 WP_124387091.1 low molecular weight protein-tyrosine-phosphatase -
  C4J94_RS16090 (C4J94_3228) kdsB 3531737..3532501 (-) 765 WP_124387092.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J94_RS16095 (C4J94_3229) - 3532498..3532683 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J94_RS16100 (C4J94_3230) lpxK 3532708..3533718 (-) 1011 WP_124387093.1 tetraacyldisaccharide 4'-kinase -
  C4J94_RS16105 (C4J94_3231) - 3533718..3534146 (-) 429 WP_124387094.1 biopolymer transporter ExbD -
  C4J94_RS16110 (C4J94_3232) exbB 3534143..3534778 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J94_RS16115 (C4J94_3233) comA 3534888..3537113 (-) 2226 WP_256657539.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J94_RS16120 (C4J94_3234) - 3537249..3537764 (+) 516 WP_124387095.1 DUF2062 domain-containing protein -
  C4J94_RS16125 (C4J94_3235) - 3537768..3539126 (-) 1359 WP_124387096.1 sensor histidine kinase -
  C4J94_RS16130 (C4J94_3236) - 3539113..3539841 (-) 729 WP_124387097.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80643.54 Da        Isoelectric Point: 10.3852

>NTDB_id=279480 C4J94_RS16115 WP_256657539.1 3534888..3537113(-) (comA) [Pseudomonas sp. R5-89-07]
MRTGMCALALGLLALRFLPTLPPTGWLLAMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGETRWLEG
RVVGLPQQTDTGVRFELADSRSRKARLPKRIRVSWHGGPAVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARHAWRDSLRQRLLATDAQAHEAAVAALVLGDGSGLEAEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAAMARFGCWPRNLPWLPWACGLAFVAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSVWQVWTRPQWLIAVGLFPLLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEGLLWLAGGALEVWFKGLALLAGQLPAWTPAEVPLAYWLVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPRQPLPHGQVTVVQLDVGQGQSLILRTRNHALLYDAGPRSGPVDQGARVVLPSLKKSGIERLDMLLLSHADADHAGGA
AAVARGLPIRRVVGGETEGLPDFLKTEPCVSGERWEWDGVSFVLWQWPDAVSGNSKSCVLQVVANGERLLLTGDIDRAAE
RALLDTALAVPTDWLQAPHHGSRSSSSRPFVQKLAPESVLISRGRGNAFGHPHSQVLERYQALGSRIYDSAEQGAVRVQL
GAFQPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279480 C4J94_RS16115 WP_256657539.1 3534888..3537113(-) (comA) [Pseudomonas sp. R5-89-07]
ATGAGGACAGGGATGTGCGCGCTTGCGCTGGGGTTGCTGGCCCTGCGTTTTCTACCCACGTTGCCGCCCACCGGTTGGCT
GTTGGCCATGTTGGTGCTGGCCTTGATGCTATTGCCGTTTCGTACTTACCCGCTGGCGTTTTTCCTGTTGGGTTTGAGCT
GGGCTTGCATCAGCGCGCAGTGGGCGCTGGATGATCGATTGCGACCGGCGCTGGACGGCGAGACGCGTTGGTTGGAAGGG
CGCGTGGTGGGGTTGCCCCAGCAGACAGACACGGGCGTGCGCTTTGAATTGGCCGACAGCCGGTCGCGCAAAGCCAGGCT
GCCCAAGCGCATTCGCGTGTCCTGGCACGGCGGGCCGGCGGTGCGCAGTGGGGAGCGCTGGCGCCTGGCTGTCACGCTTA
AAAGGCCGTCCGGTCTGCTCAATTTTCACGGTTTCGACCACGAGGCCTGGCTGTTGGCGCAGCGCATTGGCGCTACGGGC
TCGGTGAAAGACGGTGAGCGCCTGGCACCGGCCCGCCACGCGTGGCGCGACAGCCTGCGCCAACGCCTGCTGGCGACCGA
TGCGCAAGCCCATGAAGCCGCCGTCGCGGCGCTGGTGCTGGGGGATGGTTCCGGGCTGGAAGCTGAGGATTGGCAGGTGT
TGCAAGACACCGGAACCGTGCACTTGTTGGTCATTTCCGGCCAGCACATCGGCTTGCTGGCCGGGCTGATCTATGGGCTG
GTGGCCGCGATGGCACGGTTTGGCTGCTGGCCACGAAACCTGCCATGGCTCCCCTGGGCGTGCGGCCTGGCCTTTGTCGC
AGCGTTGAGTTATGGCCTGCTGGCCGGTTTCGGCGTGCCGGTGCAGCGGGCCTGCGTAATGGTTGGCCTGGTGTTGCTAT
GGCGGCTGCGCTTTCGGCATCTGGGCGCCTGGTGGCCGTTGTTGCTGGCATTCAACGGCGTACTCCTGCTTGAGCCGCTG
GCCAGTCTGCAACCGGGCTTCTGGTTGTCGTTTGCGGCGGTTGCGGTCCTGGTCCTGGCGTTCGGCGGACGGCTGGGGCC
ATGGAGTGTCTGGCAGGTATGGACGCGCCCCCAGTGGCTGATTGCCGTCGGCTTGTTTCCATTGCTGCTGGTGCTGGGAT
TACCCATTAGCCTCACTGCGCCTGTGGCCAACCTGTTCGCCGTGCCGTGGATCAGCCTGGTGGTATTGCCGTTGGCGCTG
CTGGGCACCGCGTTGCTGTGGGTGCCGCTGGCCGGCGAGGGCCTGCTCTGGCTGGCCGGTGGAGCGCTGGAGGTGTGGTT
CAAGGGCCTCGCTCTGCTGGCTGGGCAGTTGCCGGCCTGGACCCCGGCTGAGGTGCCGCTGGCTTATTGGCTGGTCAGCT
TGGCGGGCGCGGTGCTGTTGCTGCTGCCCAAGGGGGTGCCGTTCCGCTTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCCAGGCAGCCACTCCCCCATGGGCAGGTGACGGTGGTACAGCTGGATGTCGGCCAGGGGCAGTCACTGATCCT
GCGCACCCGCAATCATGCCTTGCTTTACGATGCGGGGCCTCGTTCAGGGCCGGTCGACCAGGGCGCGCGGGTGGTCTTAC
CGTCGCTGAAAAAATCCGGCATAGAGCGGCTGGACATGCTGCTGCTGAGCCATGCCGACGCCGATCATGCCGGTGGCGCG
GCAGCTGTTGCCCGCGGCTTGCCCATCAGGCGTGTGGTAGGTGGCGAAACCGAGGGATTGCCGGATTTTCTGAAGACTGA
GCCTTGTGTCAGCGGCGAGCGATGGGAGTGGGATGGCGTGTCGTTCGTGTTATGGCAGTGGCCTGACGCCGTAAGTGGCA
ACTCGAAATCCTGTGTGTTGCAGGTGGTGGCCAACGGCGAACGGCTGCTGCTCACCGGCGATATCGACCGTGCGGCGGAG
CGCGCACTGCTTGATACAGCATTGGCGGTGCCCACCGATTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCTTCATC
CAGACCCTTTGTGCAGAAGCTTGCGCCCGAGTCGGTGCTGATCTCCAGAGGCAGGGGTAACGCGTTCGGTCATCCCCATT
CACAAGTGCTGGAGCGCTATCAGGCCCTGGGCAGCCGGATATATGACAGCGCCGAACAAGGTGCGGTGCGTGTTCAATTG
GGGGCCTTCCAACCAGCCGTTGTTGCGCGTAGTCAACGCAGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

35.287

100

0.374

Multiple sequence alignment