Detailed information NTG0279472

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J94_RS04490
• Genome accession: NZ_CP027727
• Coordinates: 1001602..1002468 (-)
• Length: 288 a.a.
• NCBI ID: WP_124385090.1
• Uniprot ID: A0A3G7Y7E1
• Organism: Pseudomonas sp. R5-89-07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 996602..1007468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J94_RS04455 (C4J94_0877)	-	997409..998707 (-)	1299	WP_124385087.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J94_RS04460 (C4J94_0878)	-	998768..998941 (-)	174	WP_124388919.1	DUF3094 family protein	-
C4J94_RS04465 (C4J94_0879)	-	998994..999623 (-)	630	WP_016971624.1	DUF1780 domain-containing protein	-
C4J94_RS04470 (C4J94_0880)	-	999820..1000509 (+)	690	WP_124385088.1	energy-coupling factor ABC transporter permease	-
C4J94_RS04475 (C4J94_0881)	-	1000573..1000788 (+)	216	WP_003171680.1	hypothetical protein	-
C4J94_RS04480 (C4J94_0882)	yacG	1000785..1000985 (-)	201	WP_065887991.1	DNA gyrase inhibitor YacG	-
C4J94_RS04485 (C4J94_0883)	coaE	1000982..1001605 (-)	624	WP_124385089.1	dephospho-CoA kinase	-
C4J94_RS04490 (C4J94_0884)	pilD	1001602..1002468 (-)	867	WP_124385090.1	A24 family peptidase	Machinery gene
C4J94_RS04495 (C4J94_0885)	pilC	1002465..1003673 (-)	1209	WP_124385091.1	type II secretion system F family protein	Machinery gene
C4J94_RS04500 (C4J94_0886)	-	1003872..1004285 (+)	414	WP_124388920.1	pilin	-
C4J94_RS04510 (C4J94_0888)	-	1004586..1004891 (+)	306	WP_124385092.1	DUF6388 family protein	-
C4J94_RS04515 (C4J94_0889)	nadC	1005010..1005858 (-)	849	WP_124385093.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31898.16 Da
• Isoelectric Point: 7.8117

>NTDB_id=279472 C4J94_RS04490 WP_124385090.1 1001602..1002468(-) (pilD) [Pseudomonas sp. R5-89-07]
MSTLLDEQPWAFVGLAVVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPAEPAGPVYNLMRPDSCCPRCDRRIRPW
ENIPLLSYVMLRGRCSHCRETISARYPFTELACALICAAIAWHFGFSWQAGAVMLLSCGLLGMSLIDVDHQLLPDVLVLP
LLWLGLIVNSMGLLATLPDALWGAVFGYMSLWSVFWLFKLITGKDGMGHGDFKLLALLGAWGGWQILPLTLLMASLLGVF
AGLLLMRWRKTGVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=279472 C4J94_RS04490 WP_124385090.1 1001602..1002468(-) (pilD) [Pseudomonas sp. R5-89-07]
TTGAGCACGTTGCTGGACGAGCAGCCCTGGGCTTTTGTTGGCCTGGCGGTGGTGCTGGGCCTGATCGTTGGCAGTTTTCT
CAATGTGCTGGTGTGGCGCCTGCCCAAAATGCTCGAGCGCGAATGGCGCGCCCAGGCCCATGAAATCCTCGGCCTCCCTG
CCGAGCCAGCGGGGCCGGTGTACAACCTGATGCGCCCCGATTCCTGCTGCCCACGCTGCGATCGGCGGATTCGCCCCTGG
GAAAATATTCCCTTGCTCAGCTACGTGATGCTCAGGGGGCGTTGCAGCCATTGCCGTGAAACCATCAGCGCGCGTTACCC
CTTCACCGAACTGGCGTGCGCGCTGATCTGCGCCGCTATCGCCTGGCATTTCGGCTTCAGCTGGCAGGCGGGTGCGGTGA
TGCTGCTCAGTTGCGGGTTGCTGGGCATGAGCCTGATCGACGTGGACCACCAACTGCTACCGGATGTCCTCGTGCTGCCG
CTGTTATGGCTGGGGCTTATCGTCAACAGCATGGGCCTGCTGGCGACATTGCCCGATGCGTTATGGGGCGCGGTGTTTGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGTTGGCGCTGTTAGGCGCCTGGGGTGGCTGGCAGATACTGCCGTTGACGCTGCTGATGGCGTCACTGCTTGGCGTGTTC
GCCGGGCTGCTGCTGATGCGCTGGCGCAAGACGGGGGTGTCGGCACCGATGCCATTTGGGCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

3D structure

• AlphaFold DB: A0A3G7Y7E1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.518	96.528	0.507
pilD	Vibrio campbellii strain DS40M4	48.746	96.875	0.472
pilD	Neisseria gonorrhoeae MS11	46.667	93.75	0.438
pilD	Acinetobacter baumannii D1279779	43.841	95.833	0.42
pilD	Acinetobacter nosocomialis M2	44.322	94.792	0.42