Detailed information NTG0279425

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4J96_RS03880
• Genome accession: NZ_CP027725
• Coordinates: 885298..886164 (-)
• Length: 288 a.a.
• NCBI ID: WP_124356998.1
• Uniprot ID: -
• Organism: Pseudomonas orientalis strain R2-66-08W
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 880298..891164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J96_RS03840	-	880694..880940 (-)	247	Protein_735	ParA family protein	-
C4J96_RS03845 (C4J96_0785)	-	881171..882469 (-)	1299	WP_124425975.1	NAD(P)/FAD-dependent oxidoreductase	-
C4J96_RS03850 (C4J96_0786)	-	882530..882703 (-)	174	WP_124356994.1	DUF3094 family protein	-
C4J96_RS03855 (C4J96_0787)	-	882757..883386 (-)	630	WP_124356995.1	DUF1780 domain-containing protein	-
C4J96_RS03860 (C4J96_0788)	-	883516..884205 (+)	690	WP_124356996.1	energy-coupling factor ABC transporter permease	-
C4J96_RS03865 (C4J96_0789)	-	884269..884484 (+)	216	WP_003171680.1	hypothetical protein	-
C4J96_RS03870 (C4J96_0790)	yacG	884481..884681 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
C4J96_RS03875 (C4J96_0791)	coaE	884678..885301 (-)	624	WP_124425976.1	dephospho-CoA kinase	-
C4J96_RS03880 (C4J96_0792)	pilD	885298..886164 (-)	867	WP_124356998.1	prepilin peptidase	Machinery gene
C4J96_RS03885 (C4J96_0793)	pilC	886161..887369 (-)	1209	WP_124425977.1	type II secretion system F family protein	Machinery gene
C4J96_RS03890 (C4J96_0794)	-	887568..887981 (+)	414	WP_124360463.1	pilin	-
C4J96_RS03900 (C4J96_0796)	-	888325..888630 (+)	306	WP_124357000.1	DUF6388 family protein	-
C4J96_RS03905 (C4J96_0797)	nadC	888751..889599 (-)	849	WP_124357001.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31765.10 Da
• Isoelectric Point: 8.1698

>NTDB_id=279425 C4J96_RS03880 WP_124356998.1 885298..886164(-) (pilD) [Pseudomonas orientalis strain R2-66-08W]
MSALLGEQPWAFVGMALMLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPGAPVGPVYNLMRPNSCCPHCDQPIRPW
ENIPLLSYLMLKGRCTHCRATISARYPLTELACALISATVAWHFGFGWQAGAVMLLSWGLLGMSLIDVDHQLLPDALVLP
LLWLGLILNSLGLLATLPDALWGAVLGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLF
AGLLLMRWRKTQVSTPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=279425 C4J96_RS03880 WP_124356998.1 885298..886164(-) (pilD) [Pseudomonas orientalis strain R2-66-08W]
TTGAGCGCGTTGCTGGGCGAGCAGCCCTGGGCGTTTGTCGGCATGGCGCTGATGCTGGGCCTGATCGTCGGCAGTTTTCT
CAATGTGCTGGTATGGCGCCTGCCCAAGATGCTCGAGCGCGAATGGCGCGCCCAGGCCCATGAGATCCTCGGCCTGCCTG
GCGCACCCGTGGGGCCGGTCTATAACCTGATGCGCCCTAACTCATGCTGCCCGCACTGCGACCAGCCGATTCGCCCCTGG
GAAAATATCCCCCTGCTCAGCTACCTGATGCTCAAGGGTCGTTGCACCCATTGCCGTGCAACCATCAGCGCGCGCTATCC
CCTCACCGAACTGGCCTGTGCGCTGATATCCGCCACCGTCGCCTGGCACTTCGGTTTTGGCTGGCAGGCGGGCGCGGTGA
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGACGTGGATCACCAGCTGCTGCCGGATGCCCTGGTGCTGCCG
CTGCTATGGCTGGGACTTATCCTCAACAGCCTGGGCCTGCTGGCGACATTGCCCGATGCGTTATGGGGCGCGGTGCTCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGCTGCTGGGTGCCTGGGGCGGCTGGCAGATACTGCCGATGACGCTGCTGATGGCGTCACTGCTCGGCTTGTTT
GCCGGGCTGCTGCTGATGCGCTGGCGCAAGACGCAGGTGTCGACACCAATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.597	96.528	0.517
pilD	Vibrio campbellii strain DS40M4	48.754	97.569	0.476
pilD	Neisseria gonorrhoeae MS11	47.778	93.75	0.448
pilD	Acinetobacter nosocomialis M2	45.421	94.792	0.431
pilD	Acinetobacter baumannii D1279779	45.421	94.792	0.431