Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C4J97_RS15650 Genome accession   NZ_CP027724
Coordinates   3520006..3522231 (-) Length   741 a.a.
NCBI ID   WP_124424019.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain L1-3-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3515006..3527231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J97_RS15615 (C4J97_3163) murB 3515375..3516394 (-) 1020 WP_124424015.1 UDP-N-acetylmuramate dehydrogenase -
  C4J97_RS15620 (C4J97_3164) - 3516391..3516855 (-) 465 WP_124424016.1 low molecular weight protein-tyrosine-phosphatase -
  C4J97_RS15625 (C4J97_3165) kdsB 3516855..3517619 (-) 765 WP_057721828.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J97_RS15630 (C4J97_3166) - 3517616..3517801 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J97_RS15635 (C4J97_3167) lpxK 3517826..3518836 (-) 1011 WP_124424017.1 tetraacyldisaccharide 4'-kinase -
  C4J97_RS15640 (C4J97_3168) - 3518836..3519264 (-) 429 WP_057721826.1 ExbD/TolR family protein -
  C4J97_RS15645 (C4J97_3169) exbB 3519261..3519896 (-) 636 WP_124424018.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J97_RS15650 (C4J97_3170) comA 3520006..3522231 (-) 2226 WP_124424019.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J97_RS15655 (C4J97_3171) - 3522367..3522882 (+) 516 WP_065894963.1 DUF2062 domain-containing protein -
  C4J97_RS15660 (C4J97_3172) - 3522886..3524244 (-) 1359 WP_124424020.1 sensor histidine kinase -
  C4J97_RS15665 (C4J97_3173) - 3524231..3524959 (-) 729 WP_124424021.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80862.96 Da        Isoelectric Point: 10.8719

>NTDB_id=279408 C4J97_RS15650 WP_124424019.1 3520006..3522231(-) (comA) [Pseudomonas orientalis strain L1-3-08]
MRTGMFTLALGLLTLRLLPALPPTGWLLAMLVLALMLLPFRTYPLAFFLVGLSWACISAQWALDDRLRSALDGETRWLEG
RVVGLPQQTDAGVRFELADSRSRKARLPKRIRVSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNAWRDNLRQRLMASDAQTQEAALAALVLGDGSGLRAEQWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGMARYACWPRKLPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVMLWRLRFRHLGAWWPLLLAFNGVLLLEPL
ASLQPGFWLSFAAVAILVLTFGARLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
MGTVLLWVPLAGDGLLWLAGGALEGWFKMLALLAGQLPAWTPTQVPLAYWLVSLVGAVMLLLPKGVPFRLLGWPMLLLAV
FPPRESVPHGQVMVVQLDVGQGQALILRTRNHALLYDAGPRSGSVDLGARVVVPALKTFGIARLDMLLLSHADADHAGGA
AAIARGLPIRRVVGGETEGLPAFLGTEPCISGERWEWDGVAFTLWQWSDALSGNPKSCVLQVQANGERLLLTGDIDSAAE
RALLDTPLAVPTDWLQAPHHGSRSSSSRPFVQRLAPRSVLISRGQGNAFGHPHSQVIERYQAQGSRLYDSAEHGAVRFQL
GAFQPAIVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=279408 C4J97_RS15650 WP_124424019.1 3520006..3522231(-) (comA) [Pseudomonas orientalis strain L1-3-08]
ATGAGGACAGGGATGTTCACGCTGGCACTGGGGTTGCTGACCCTGCGCCTGCTTCCGGCGTTGCCGCCTACCGGATGGCT
GCTGGCCATGCTGGTGTTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCGTTGGCGTTTTTCCTGGTGGGTTTGAGCT
GGGCGTGCATCAGTGCGCAGTGGGCCCTGGATGATCGATTGCGCTCGGCGCTGGACGGCGAGACGCGTTGGCTGGAGGGG
CGTGTGGTCGGGTTGCCGCAACAGACGGACGCCGGCGTGCGCTTTGAACTGGCCGACAGCCGGTCGCGCAAAGCCCGACT
GCCCAAGCGCATCCGTGTGTCCTGGCACGGCGGGCCGCCGGTACGCAGTGGGGAACGCTGGCGCTTGGCGGTCACGCTCA
AGCGGCCGTCCGGCCTGCTCAATTTTCATGGTTTCGATCACGAGGCCTGGCTGCTGGCGCAACGCATTGGGGCCACGGGC
TCGGTGAAAGACGGTGAGCGCCTGGCGCCGGCCCGCAACGCATGGCGCGACAACCTGCGCCAACGCCTGATGGCCAGCGA
TGCGCAAACCCAGGAAGCAGCGCTGGCGGCGTTGGTGCTGGGTGACGGTTCCGGGCTTCGAGCGGAGCAATGGCAAGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTCATTTCCGGCCAACACATTGGCCTGTTGGCCGGGCTGATCTACGCACTG
GTGGCCGGGATGGCACGTTACGCTTGCTGGCCGCGCAAACTGCCATGGCTGCCTTGGGCCTGCGGCCTGGCCTTTGTCGC
AGCGCTGGGCTATGGCCTGCTGGCGGGGTTCGGTGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTGATGCTCT
GGCGGCTGCGCTTTCGGCATTTGGGCGCTTGGTGGCCATTATTGCTGGCGTTCAACGGCGTACTGCTGCTTGAGCCCCTG
GCCAGTCTGCAGCCGGGCTTCTGGTTGTCATTTGCGGCGGTTGCGATCTTGGTCCTGACGTTCGGCGCAAGGCTGGGGCC
CTGGAGTGTTTGGCAGGCATGGACGCGTCCCCAGTGGCTGATTGCTATCGGCTTGTTTCCAGTCCTGCTGGTGCTGGGGT
TACCCATCAGCCTCACCGCGCCCGTGGCCAATTTGTTTGCGGTGCCCTGGATCAGTCTGGTGGTGTTGCCTCTGGCGCTA
ATGGGCACGGTACTGCTGTGGGTGCCGTTGGCCGGTGACGGCCTGCTCTGGTTGGCCGGCGGGGCGTTGGAGGGGTGGTT
CAAGATGCTGGCCCTGCTGGCCGGGCAGTTGCCGGCCTGGACGCCGACCCAGGTGCCGTTGGCGTATTGGCTGGTCAGCC
TGGTGGGCGCGGTGATGCTGCTGCTGCCCAAGGGCGTGCCGTTTCGGTTGCTGGGCTGGCCCATGCTGTTGCTGGCGGTG
TTTCCACCCAGGGAATCGGTACCCCACGGGCAGGTGATGGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCGCTGATTCT
GCGCACCCGCAATCATGCCTTGCTTTACGATGCCGGGCCTCGTTCCGGGTCGGTCGATCTGGGCGCGCGCGTGGTCGTGC
CGGCGTTGAAAACGTTCGGGATAGCGCGGCTCGACATGCTGCTGCTGAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCGATTGCCCGTGGTTTGCCCATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGGTTGCCGGCTTTTCTGGGGACTGA
GCCTTGTATCAGTGGCGAGCGGTGGGAGTGGGACGGTGTGGCATTCACGTTATGGCAGTGGTCTGACGCCCTAAGTGGCA
ATCCAAAATCCTGTGTATTGCAGGTGCAGGCCAATGGCGAACGGCTGCTGCTCACCGGCGATATCGACAGCGCGGCGGAG
CGCGCCTTGCTGGACACGCCACTGGCGGTGCCAACCGATTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGGCCCTTTGTACAGCGGCTTGCGCCCAGGTCGGTGCTGATTTCCCGGGGCCAAGGCAACGCCTTCGGTCATCCCCACT
CGCAAGTGATAGAGCGCTATCAGGCCCAGGGCAGCCGACTGTACGACAGTGCCGAACACGGGGCCGTGCGTTTTCAGCTC
GGTGCCTTTCAGCCGGCCATTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.666

97.031

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.518

100

0.367

Multiple sequence alignment