Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4J97_RS15645 Genome accession   NZ_CP027724
Coordinates   3519261..3519896 (-) Length   211 a.a.
NCBI ID   WP_124424018.1    Uniprot ID   -
Organism   Pseudomonas orientalis strain L1-3-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514261..3524896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J97_RS15610 (C4J97_3162) - 3514632..3515303 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  C4J97_RS15615 (C4J97_3163) murB 3515375..3516394 (-) 1020 WP_124424015.1 UDP-N-acetylmuramate dehydrogenase -
  C4J97_RS15620 (C4J97_3164) - 3516391..3516855 (-) 465 WP_124424016.1 low molecular weight protein-tyrosine-phosphatase -
  C4J97_RS15625 (C4J97_3165) kdsB 3516855..3517619 (-) 765 WP_057721828.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4J97_RS15630 (C4J97_3166) - 3517616..3517801 (-) 186 WP_003174668.1 Trm112 family protein -
  C4J97_RS15635 (C4J97_3167) lpxK 3517826..3518836 (-) 1011 WP_124424017.1 tetraacyldisaccharide 4'-kinase -
  C4J97_RS15640 (C4J97_3168) - 3518836..3519264 (-) 429 WP_057721826.1 ExbD/TolR family protein -
  C4J97_RS15645 (C4J97_3169) exbB 3519261..3519896 (-) 636 WP_124424018.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4J97_RS15650 (C4J97_3170) comA 3520006..3522231 (-) 2226 WP_124424019.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4J97_RS15655 (C4J97_3171) - 3522367..3522882 (+) 516 WP_065894963.1 DUF2062 domain-containing protein -
  C4J97_RS15660 (C4J97_3172) - 3522886..3524244 (-) 1359 WP_124424020.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22958.12 Da        Isoelectric Point: 7.3617

>NTDB_id=279407 C4J97_RS15645 WP_124424018.1 3519261..3519896(-) (exbB) [Pseudomonas orientalis strain L1-3-08]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279407 C4J97_RS15645 WP_124424018.1 3519261..3519896(-) (exbB) [Pseudomonas orientalis strain L1-3-08]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGCAGAAGCTCAAGGAACTGCGCGCCAATTCGCCGTTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCGCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGTTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCCGTGCTGGCCGGTGGTATTTCCAAGGCATTGATCACCACGGCT
GCGGGCCTGATGGTGGGTATCCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment