Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   D9C12_RS17060 Genome accession   NZ_CP032857
Coordinates   3175686..3176690 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3170686..3181690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS17035 (D9C12_17035) acuA 3171613..3172245 (+) 633 WP_014480567.1 acetoin utilization protein acetyltransferase AcuA -
  D9C12_RS17040 (D9C12_17040) acuB 3172272..3172916 (+) 645 WP_014480568.1 acetoin utilization AcuB family protein -
  D9C12_RS17045 (D9C12_17045) acuC 3172913..3174076 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  D9C12_RS17050 (D9C12_17050) motS 3174087..3174815 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  D9C12_RS17055 (D9C12_17055) motP 3174805..3175623 (-) 819 WP_004398692.1 flagellar motor protein MotP -
  D9C12_RS17060 (D9C12_17060) ccpA 3175686..3176690 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  D9C12_RS17065 (D9C12_17065) aroX 3176966..3178042 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  D9C12_RS17070 (D9C12_17070) ytxJ 3178279..3178605 (-) 327 WP_014480571.1 bacillithiol system redox-active protein YtxJ -
  D9C12_RS17075 (D9C12_17075) ytxH 3178629..3179084 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  D9C12_RS17080 (D9C12_17080) ytxG 3179115..3179537 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  D9C12_RS17085 (D9C12_17085) murC 3179699..3180996 (-) 1298 Protein_3296 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=279385 D9C12_RS17060 WP_003229285.1 3175686..3176690(-) (ccpA) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=279385 D9C12_RS17060 WP_003229285.1 3175686..3176690(-) (ccpA) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503