Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K16_RS28980 Genome accession   NZ_CP027717
Coordinates   6412269..6412676 (-) Length   135 a.a.
NCBI ID   WP_007929962.1    Uniprot ID   A0AAJ0ZLS6
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6407269..6417676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K16_RS28965 (C4K16_5876) - 6409148..6411184 (-) 2037 WP_227746013.1 methyl-accepting chemotaxis protein -
  C4K16_RS28970 (C4K16_5877) - 6411309..6411848 (-) 540 WP_038575084.1 chemotaxis protein CheW -
  C4K16_RS28975 (C4K16_5878) pilH 6411860..6412225 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  C4K16_RS28980 (C4K16_5879) pilG 6412269..6412676 (-) 408 WP_007929962.1 twitching motility response regulator PilG Regulator
  C4K16_RS28985 (C4K16_5880) gshB 6412914..6413888 (+) 975 WP_081359520.1 glutathione synthase -
  C4K16_RS28990 (C4K16_5881) - 6414039..6414938 (+) 900 WP_081359519.1 energy transducer TonB -
  C4K16_RS28995 (C4K16_5882) - 6415164..6415733 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  C4K16_RS29000 (C4K16_5883) ruvX 6415733..6416170 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  C4K16_RS29005 (C4K16_5884) pyrR 6416292..6416798 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 7.2445

>NTDB_id=279240 C4K16_RS28980 WP_007929962.1 6412269..6412676(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=279240 C4K16_RS28980 WP_007929962.1 6412269..6412676(-) (pilG) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGCT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment