Detailed information NTG0279225

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K16_RS08880
• Genome accession: NZ_CP027717
• Coordinates: 1960243..1962474 (+)
• Length: 743 a.a.
• NCBI ID: WP_124336241.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1955243..1967474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K16_RS08855 (C4K16_1788)	-	1956364..1957023 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K16_RS08860 (C4K16_1789)	-	1957066..1957689 (+)	624	WP_124336240.1	glutathione S-transferase	-
C4K16_RS08865 (C4K16_1790)	-	1957822..1958754 (+)	933	WP_053268526.1	ABC transporter ATP-binding protein	-
C4K16_RS08870 (C4K16_1791)	-	1958751..1959530 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K16_RS08875 (C4K16_1792)	-	1959579..1960094 (-)	516	WP_038580916.1	DUF2062 domain-containing protein	-
C4K16_RS08880 (C4K16_1793)	comA	1960243..1962474 (+)	2232	WP_124336241.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K16_RS08885 (C4K16_1794)	exbB	1962577..1963212 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K16_RS08890 (C4K16_1795)	-	1963209..1963637 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K16_RS08895 (C4K16_1796)	lpxK	1963637..1964647 (+)	1011	WP_124336242.1	tetraacyldisaccharide 4'-kinase	-
C4K16_RS08900 (C4K16_1797)	-	1964671..1964856 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K16_RS08905 (C4K16_1798)	kdsB	1964853..1965617 (+)	765	WP_016702178.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K16_RS08910 (C4K16_1799)	-	1965617..1966081 (+)	465	WP_081362292.1	low molecular weight protein-tyrosine-phosphatase	-
C4K16_RS08915 (C4K16_1800)	murB	1966078..1967097 (+)	1020	WP_081362291.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81262.45 Da
• Isoelectric Point: 10.1399

>NTDB_id=279225 C4K16_RS08880 WP_124336241.1 1960243..1962474(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYALALFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVRSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLTVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GSYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279225 C4K16_RS08880 WP_124336241.1 1960243..1962474(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTGTTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGTGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCGCAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCGGAGGGCGGCTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCGCTGGTACTGGGCGACGGTTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATTTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTACGGGTTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTCGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGTGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGACGGTGCCCTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGCGGTTTGTTGGACTTGCTGTT
CCGCGGTCTGACGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTTCCGCCGAAAAACACTCTGCCATACGGCGAGGCGGAAGTTTGGCAACTGGATGTCGGGCAGGGACTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGCGACTCCGACCTGGGCGCGCGGGTGGTACTGC
CATCATTGCGCAAGCTGGGCATTGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGTGCC
GATGCCGTCCAGCGCGGCTTACCGGTGGCCAGGCTAGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGCCCTGGCGGAA
CGAGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCACACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTGGCGCCTTCGGCAGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCACTACGGCTGATGTTG
GGTTCCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.978	96.77	0.619