Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K16_RS08885 Genome accession   NZ_CP027717
Coordinates   1962577..1963212 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957577..1968212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K16_RS08865 (C4K16_1790) - 1957822..1958754 (+) 933 WP_053268526.1 ABC transporter ATP-binding protein -
  C4K16_RS08870 (C4K16_1791) - 1958751..1959530 (+) 780 WP_007931651.1 ABC transporter permease -
  C4K16_RS08875 (C4K16_1792) - 1959579..1960094 (-) 516 WP_038580916.1 DUF2062 domain-containing protein -
  C4K16_RS08880 (C4K16_1793) comA 1960243..1962474 (+) 2232 WP_124336241.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K16_RS08885 (C4K16_1794) exbB 1962577..1963212 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K16_RS08890 (C4K16_1795) - 1963209..1963637 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  C4K16_RS08895 (C4K16_1796) lpxK 1963637..1964647 (+) 1011 WP_124336242.1 tetraacyldisaccharide 4'-kinase -
  C4K16_RS08900 (C4K16_1797) - 1964671..1964856 (+) 186 WP_007931663.1 Trm112 family protein -
  C4K16_RS08905 (C4K16_1798) kdsB 1964853..1965617 (+) 765 WP_016702178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K16_RS08910 (C4K16_1799) - 1965617..1966081 (+) 465 WP_081362292.1 low molecular weight protein-tyrosine-phosphatase -
  C4K16_RS08915 (C4K16_1800) murB 1966078..1967097 (+) 1020 WP_081362291.1 UDP-N-acetylmuramate dehydrogenase -
  C4K16_RS08920 (C4K16_1801) - 1967346..1967816 (+) 471 WP_081362290.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=279226 C4K16_RS08885 WP_007931657.1 1962577..1963212(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=279226 C4K16_RS08885 WP_007931657.1 1962577..1963212(+) (exbB) [Pseudomonas chlororaphis subsp. aurantiaca strain PCM 2210]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment