Detailed information NTG0279182

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K24_RS25940
• Genome accession: NZ_CP027715
• Coordinates: 5747847..5748719 (+)
• Length: 290 a.a.
• NCBI ID: WP_038575692.1
• Uniprot ID: A0AAJ0ZPM1
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain M12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5742847..5753719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K24_RS25925 (C4K24_5275)	-	5745202..5745558 (-)	357	WP_009050906.1	BON domain-containing protein	-
C4K24_RS25930 (C4K24_5276)	-	5745846..5746262 (-)	417	WP_009050907.1	pilin	-
C4K24_RS25935 (C4K24_5277)	pilC	5746627..5747844 (+)	1218	WP_038575694.1	type II secretion system F family protein	Machinery gene
C4K24_RS25940 (C4K24_5278)	pilD	5747847..5748719 (+)	873	WP_038575692.1	A24 family peptidase	Machinery gene
C4K24_RS25945 (C4K24_5279)	coaE	5748716..5749339 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
C4K24_RS25950 (C4K24_5280)	yacG	5749336..5749539 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K24_RS25955 (C4K24_5281)	-	5749544..5749759 (-)	216	WP_009050911.1	hypothetical protein	-
C4K24_RS25960 (C4K24_5282)	-	5749825..5750514 (-)	690	WP_081359729.1	energy-coupling factor ABC transporter permease	-
C4K24_RS25965 (C4K24_5283)	-	5750511..5750978 (-)	468	WP_016703672.1	hypothetical protein	-
C4K24_RS25970 (C4K24_5284)	-	5751433..5752869 (+)	1437	WP_124309587.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32054.16 Da
• Isoelectric Point: 7.9954

>NTDB_id=279182 C4K24_RS25940 WP_038575692.1 5747847..5748719(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWSFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITSSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279182 C4K24_RS25940 WP_038575692.1 5747847..5748719(+) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain M12]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGGCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGATTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCATTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATTGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTATACTGGTCGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCAGTTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	97.931	0.514
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	50.545	94.828	0.479
pilD	Acinetobacter nosocomialis M2	49.818	94.828	0.472
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448