Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   D9C11_RS04565 Genome accession   NZ_CP032855
Coordinates   810411..811415 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 805411..816415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS04540 (D9C11_04540) acuA 806338..806970 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  D9C11_RS04545 (D9C11_04545) acuB 806997..807641 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  D9C11_RS04550 (D9C11_04550) acuC 807638..808801 (+) 1164 WP_121591062.1 acetoin utilization protein AcuC -
  D9C11_RS04555 (D9C11_04555) motS 808812..809540 (-) 729 WP_017695489.1 flagellar motor protein MotS -
  D9C11_RS04560 (D9C11_04560) motP 809530..810348 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  D9C11_RS04565 (D9C11_04565) ccpA 810411..811415 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  D9C11_RS04570 (D9C11_04570) aroX 811691..812767 (-) 1077 WP_041339769.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  D9C11_RS04575 (D9C11_04575) ytxJ 813003..813329 (-) 327 WP_015251445.1 bacillithiol system redox-active protein YtxJ -
  D9C11_RS04580 (D9C11_04580) ytxH 813352..813807 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  D9C11_RS04585 (D9C11_04585) ytxG 813837..814259 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  D9C11_RS04590 (D9C11_04590) murC 814421..815719 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=279149 D9C11_RS04565 WP_003229285.1 810411..811415(-) (ccpA) [Bacillus subtilis subsp. subtilis strain PJ-7]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=279149 D9C11_RS04565 WP_003229285.1 810411..811415(-) (ccpA) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGAGCAATATTACGATCTACGACGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGACTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAACT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTGGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGTCTCATGGTTCGTCCGCAGCTGTCAACAGTTGTTCAGC
CGACATACGATATTGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATCGAGCTAAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503