Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D9C10_RS16760 Genome accession   NZ_CP032853
Coordinates   3077164..3079149 (-) Length   661 a.a.
NCBI ID   WP_121549158.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3072164..3084149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS16740 (D9C10_16740) yvlA 3072164..3072490 (-) 327 WP_003244375.1 protein YvlA -
  D9C10_RS16745 (D9C10_16745) - 3072708..3072956 (+) 249 WP_041055202.1 hypothetical protein -
  D9C10_RS16750 (D9C10_16750) hag 3073124..3073945 (-) 822 WP_029318328.1 flagellin Hag -
  D9C10_RS16755 (D9C10_16755) uvrA 3074283..3077156 (-) 2874 WP_121549156.1 excinuclease ABC subunit UvrA Machinery gene
  D9C10_RS16760 (D9C10_16760) uvrB 3077164..3079149 (-) 1986 WP_121549158.1 excinuclease ABC subunit UvrB Machinery gene
  D9C10_RS16765 (D9C10_16765) csbA 3079335..3079565 (-) 231 WP_003228053.1 CsbA family protein -
  D9C10_RS16770 (D9C10_16770) fpsC 3080013..3082505 (+) 2493 WP_121549160.1 PEP/pyruvate-binding domain-containing protein -
  D9C10_RS16775 (D9C10_16775) yvkB 3082581..3083150 (+) 570 WP_121549162.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76372.27 Da        Isoelectric Point: 5.3810

>NTDB_id=279074 D9C10_RS16760 WP_121549158.1 3077164..3079149(-) (uvrB) [Bacillus subtilis subsp. subtilis strain MH-1]
MKDRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYMPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDKIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSM
EIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAK
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=279074 D9C10_RS16760 WP_121549158.1 3077164..3079149(-) (uvrB) [Bacillus subtilis subsp. subtilis strain MH-1]
GTGAAAGATCGCTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGAAAGCCATTGAAAAGCTTGTGAAAGG
AATTCAGGAAGGCAAGAAGCATCAGACTCTGCTGGGTGCGACAGGAACTGGGAAAACATTTACGGTGTCTAATTTGATTA
AAGAAGTCAATAAGCCGACTCTCGTGATTGCCCATAACAAAACCCTTGCTGGACAGCTTTACAGTGAGTTCAAGGAATTT
TTTCCGAACAATGCTGTCGAGTATTTTGTCAGCTACTATGATTATTATCAGCCGGAGGCGTATATGCCTCAAACGGATAC
ATTTATAGAGAAAGACGCTAGTATTAATGATGAAATTGATAAACTGAGACACTCCGCCACATCAGCTTTGTTTGAGCGCA
GAGATGTCATTATTATTGCGAGTGTGTCTTGTATATACGGCCTCGGTTCGCCTGAGGAATACCGGGAAATGGTCGTGTCA
CTGCGGACTGAAATGGAAATTGAGCGCAACGAGCTGCTCAGAAAACTTGTAGACATCCAATATGCCCGCAACGATATCGA
CTTTCAGCGCGGTACATTTCGTGTGCGCGGGGATGTAGTGGAAATCTTTCCGGCATCCCGTGATGAGCATTGTATCAGAG
TTGAATTTTTCGGTGACAAAATCGAACGGATTCGGGAAGTGGATGCGCTGACAGGAGAAATTCTCGGCGACCGAGATCAT
GTTGCGATTTTCCCGGCATCCCACTTCGTAACGCGGGCCGAGAAAATGGAGAAGGCGATTCAAAATATCGAGAAGGAGCT
TGAGGAGCAGCTGAAGGTCATGCATGAAAACGGAAAGCTCCTTGAAGCGCAGCGTTTAGAGCAGCGGACAAGATATGATC
TTGAAATGATGCGTGAAATGGGTTTCTGCTCCGGCATCGAGAACTATTCAAGACATTTGACTCTGCGGCCTCCAGGTTCA
ACGCCGTATACGCTTCTTGATTATTTCCCAGACGATTTTATGATCGTGGTGGATGAGTCGCATGTGACAATTCCCCAGGT
GCGCGGCATGTTTAACGGAGACCAGGCGCGGAAACAGGTGCTCGTGGATCACGGCTTCCGGCTTCCATCAGCGCTTGATA
ACCGTCCGCTTCGTTTTGAGGAATTTGAAAAGCATATGCACAATATCGTGTATGTATCAGCAACACCAGGGCCGTACGAG
ATTGAACATACAGATGAAATGGTCGAACAGATCATTCGTCCGACGGGGCTACTTGACCCGCTTATTGACGTCCGTCCAAT
CGAAGGTCAGATTGACGACTTGATCGGCGAAATTCAAGCAAGAATCGAGCGGAATGAACGGGTGCTTGTGACAACTTTGA
CGAAGAAGATGTCGGAGGATCTGACCGATTATTTAAAGGAAATCGGCATTAAAGTAAACTATCTGCATTCTGAGATCAAG
ACGCTTGAACGGATTGAAATTATCCGCGACCTGCGCCTTGGCAAGTACGATGTGCTTGTCGGCATCAACCTGCTGAGGGA
AGGTTTGGACATTCCCGAAGTATCCCTTGTTGCGATTTTGGATGCGGATAAGGAAGGTTTCCTTCGTTCGGAGCGGTCGC
TGATCCAGACCATCGGACGGGCAGCGAGAAATGCGGAAGGCCGCGTCATTATGTACGCCGATAAAATAACGAAGTCTATG
GAAATTGCGATTAATGAAACAAAACGCCGCCGCGAGCAGCAGGAGCGGTTTAACGAAGAGCACGGCATTACGCCGAAAAC
GATAAATAAAGAAATTCGCGATGTCATTCGTGCCACAGTAGCAGCTGAGGATAAAGCGGAATACAAAACAAAAGCCGCGC
CGAAGCTGTCGAAAATGACGAAGAAAGAACGCCAGAAAGTCGTTGAACAGATGGAGCATGAAATGAAGGAAGCCGCTAAG
GCGCTTGACTTTGAAAGAGCCGCGGAGCTTCGCGATTTACTTTTAGAGCTAAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

UvrB interaction domain (UvrB_inter)

(159-249)

UvrB/uvrC motif (UVR)

(626-659)

Type III restriction enzyme, res subunit (ResIII)

(12-138)

Ultra-violet resistance protein B (UvrB)

(551-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.258

99.697

0.7
  uvrB Streptococcus pneumoniae R6

70.106

99.697

0.699
  uvrB Streptococcus pneumoniae D39

70.106

99.697

0.699