Detailed information NTG0278938

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K39_RS09070
• Genome accession: NZ_CP027706
• Coordinates: 1913495..1915726 (+)
• Length: 743 a.a.
• NCBI ID: WP_124346167.1
• Uniprot ID: -
• Organism: Pseudomonas sessilinigenes strain CMR12a
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1908495..1920726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K39_RS09045 (C4K39_1846)	-	1909621..1910280 (+)	660	WP_124346164.1	transglutaminase family protein	-
C4K39_RS09050 (C4K39_1847)	-	1910323..1910946 (+)	624	WP_068578027.1	glutathione S-transferase family protein	-
C4K39_RS09055 (C4K39_1848)	-	1911079..1912011 (+)	933	WP_124346165.1	ABC transporter ATP-binding protein	-
C4K39_RS09060 (C4K39_1849)	-	1912008..1912787 (+)	780	WP_068578002.1	ABC transporter permease	-
C4K39_RS09065 (C4K39_1850)	-	1912839..1913354 (-)	516	WP_124346166.1	DUF2062 domain-containing protein	-
C4K39_RS09070 (C4K39_1851)	comA	1913495..1915726 (+)	2232	WP_124346167.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K39_RS09075 (C4K39_1852)	exbB	1915829..1916464 (+)	636	WP_068577997.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K39_RS09080 (C4K39_1853)	-	1916461..1916889 (+)	429	WP_068577995.1	biopolymer transporter ExbD	-
C4K39_RS09085 (C4K39_1854)	lpxK	1916889..1917899 (+)	1011	WP_124346168.1	tetraacyldisaccharide 4'-kinase	-
C4K39_RS09090 (C4K39_1855)	-	1917924..1918109 (+)	186	WP_056836870.1	Trm112 family protein	-
C4K39_RS09095 (C4K39_1856)	kdsB	1918106..1918870 (+)	765	WP_124346169.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K39_RS09100 (C4K39_1857)	-	1918870..1919334 (+)	465	WP_068577989.1	low molecular weight protein-tyrosine-phosphatase	-
C4K39_RS09105 (C4K39_1858)	murB	1919331..1920350 (+)	1020	WP_068577987.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 82090.15 Da
• Isoelectric Point: 10.6619

>NTDB_id=278938 C4K39_RS09070 WP_124346167.1 1913495..1915726(+) (comA) [Pseudomonas sessilinigenes strain CMR12a]
MRTGMLGLAAGLLALGFLPALPPAWWLWPMGILALMMLPFRTHPVAFFLFGLAWACTCAQWALDDRLASRLDGQTRWLEG
RVVGLPESGTGVVRFEVQDAQARRDRLPRRMRLSWRDGPQVRSGERWRLAVTLRRPAGLLNLQGFDYEAWLLARRIGATG
TIKDGQLLAAARGAWRDGLRQRLLAVEAHGRAGGLAALVMGDGSGLAREDWQLLQDTGTVHLMVISGQHISLLAGVVYLA
VAGLARHGAWPERWPWLPWACALAFLAALGYGLLAGFDVPVQRSCVMVALVLLWRLRFRHLGTWWPLLLALDAVLLFEPL
ASLQPGFWLSFAAVAILVFTFAGRLGTWRWWQSWSRAQWLVAIGLLPSLLALGLPISLSGPVANLLAVPWISFLVLPPAL
LGCLLLPVPYLGEGMLWLAGGLLDGLFRWLEVVARWSPAWMAPLLPWWLWVLSCLGAGLLLLPAGTPLRIFGWPLLLLVA
WPPPQRVPYGQAEVWQLDVGQGLSFILRTRERAMLYDAGARSGDFDLGERVVVPTLHRLAIRQLDLMLLSHADNDHAGGA
LAVQRALPVHLVRSGEPRELPAALQATPCESGVSWQWDGVRFSQWQWAQARDGNQASCVLLVEANGERLLLTGDIDVQAE
RAFLDSPLGVPVHWLQAPHHGSRTSSSRALLQRLAPGAVLISRGRGNAYGHPHPQVVARYRRQGVIIYDSAEQGALKLQL
GAFSKPYSVREQRRFWRAPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=278938 C4K39_RS09070 WP_124346167.1 1913495..1915726(+) (comA) [Pseudomonas sessilinigenes strain CMR12a]
ATGCGCACAGGGATGCTGGGGTTGGCCGCGGGGCTTCTGGCACTGGGTTTCCTGCCAGCCTTGCCGCCCGCCTGGTGGTT
GTGGCCGATGGGGATACTGGCATTGATGATGCTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGCCTGGCTT
GGGCGTGCACGTGCGCGCAATGGGCGCTTGATGACCGCCTGGCCTCGCGACTGGATGGGCAGACCCGTTGGCTGGAGGGG
AGGGTCGTCGGTTTGCCGGAGAGCGGAACAGGGGTAGTACGTTTCGAGGTGCAGGATGCCCAGGCCCGGCGTGATCGGTT
GCCAAGGCGAATGCGCCTGAGCTGGCGTGATGGGCCGCAGGTCAGAAGTGGCGAGCGCTGGCGCCTGGCGGTGACCTTGC
GGCGCCCGGCGGGCCTGCTCAATCTGCAGGGTTTCGACTACGAAGCCTGGTTGCTGGCCAGGCGGATTGGCGCCACCGGT
ACGATCAAGGACGGCCAGCTACTGGCTGCGGCCCGTGGTGCCTGGCGTGATGGCTTGCGCCAGCGGTTATTGGCCGTCGA
GGCCCATGGGCGTGCCGGAGGGCTGGCTGCTCTGGTGATGGGGGACGGTTCCGGGTTGGCGCGTGAGGATTGGCAGCTGC
TGCAGGACACTGGCACCGTGCACTTGATGGTGATCTCCGGGCAGCACATCAGCCTGTTGGCCGGGGTGGTTTACCTGGCC
GTGGCGGGATTGGCACGTCATGGCGCGTGGCCCGAGCGTTGGCCCTGGCTGCCCTGGGCTTGTGCCCTGGCATTCCTCGC
GGCCCTGGGTTATGGGCTGCTGGCCGGGTTCGACGTGCCCGTCCAGCGCTCTTGTGTGATGGTGGCGCTGGTCCTGCTCT
GGCGCTTGCGCTTTCGTCACCTGGGGACCTGGTGGCCGTTGTTGCTGGCGCTTGATGCGGTCTTGCTGTTCGAACCCCTG
GCCAGCCTGCAACCGGGGTTCTGGTTGTCGTTCGCCGCGGTGGCGATCCTGGTCTTCACCTTCGCTGGGCGCCTGGGGAC
ATGGCGCTGGTGGCAAAGCTGGAGCCGCGCCCAGTGGTTGGTGGCCATCGGCCTCTTGCCATCGCTACTGGCCCTGGGCC
TGCCCATCAGCCTCAGTGGTCCAGTGGCCAATCTGCTGGCCGTTCCCTGGATCAGTTTTCTAGTACTGCCGCCAGCCTTG
TTGGGGTGCCTGCTGTTGCCCGTGCCCTATCTGGGAGAGGGAATGCTGTGGCTGGCCGGTGGGTTGCTCGACGGGTTGTT
TCGTTGGCTGGAGGTGGTGGCCCGATGGTCCCCGGCTTGGATGGCACCCCTGCTTCCCTGGTGGCTCTGGGTCTTGTCCT
GCCTGGGTGCTGGCTTGTTGCTGTTGCCTGCTGGTACACCGTTGCGGATTTTCGGCTGGCCCTTGTTGTTGCTGGTGGCC
TGGCCACCGCCGCAGCGGGTGCCCTATGGCCAGGCCGAGGTCTGGCAGCTGGATGTGGGGCAGGGATTGTCATTCATCCT
GCGTACCAGGGAGCGCGCGATGCTGTATGACGCCGGCGCCCGCAGCGGTGATTTCGACCTGGGGGAGCGAGTGGTGGTGC
CGACCTTGCATCGGCTGGCCATCCGGCAACTGGACCTGATGCTGCTCAGCCATGCCGATAACGATCACGCCGGAGGTGCC
CTGGCGGTGCAGCGGGCGTTGCCGGTGCACCTGGTACGCAGTGGCGAGCCCCGGGAGTTGCCGGCGGCCCTGCAAGCCAC
ACCTTGTGAGTCCGGAGTGAGCTGGCAATGGGATGGCGTGCGTTTCAGCCAATGGCAATGGGCCCAAGCCCGTGATGGCA
ACCAGGCATCCTGCGTGCTGTTGGTCGAGGCGAATGGAGAGCGCCTGCTGCTCACCGGCGATATCGACGTCCAGGCCGAA
AGAGCCTTTCTAGACAGTCCGCTGGGGGTGCCTGTGCATTGGCTGCAAGCGCCTCACCACGGTAGCCGGACCTCGTCGTC
CAGGGCCTTGTTGCAGCGCCTGGCCCCTGGCGCGGTGCTGATCTCCCGGGGGCGTGGCAATGCCTATGGCCATCCCCACC
CGCAAGTGGTGGCGCGTTATCGACGCCAGGGCGTGATCATCTACGACAGCGCCGAGCAGGGGGCACTGAAGCTGCAACTG
GGGGCCTTCAGCAAGCCATACAGCGTGCGGGAGCAGCGGCGTTTCTGGCGTGCTCCACCGGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.953	96.635	0.608
comA	Ralstonia pseudosolanacearum GMI1000	32.847	100	0.363