Detailed information NTG0278939

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D9C09_RS17440
• Genome accession: NZ_CP032852
• Coordinates: 3256513..3257640 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain GFR-12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3251513..3262640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C09_RS23025	-	3251560..3251772 (-)	213	Protein_3365	recombinase family protein	-
D9C09_RS17420 (D9C09_17420)	fumC	3251991..3253379 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
D9C09_RS17425 (D9C09_17425)	-	3253546..3254436 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
D9C09_RS17430 (D9C09_17430)	-	3255378..3255773 (+)	396	WP_014480327.1	VOC family protein	-
D9C09_RS17440 (D9C09_17440)	rapC	3256513..3257640 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
D9C09_RS23155 (D9C09_17445)	-	3257822..3259748 (+)	1927	Protein_3370	T7SS effector LXG polymorphic toxin	-
D9C09_RS17450 (D9C09_17450)	-	3259762..3260049 (+)	288	WP_014480331.1	hypothetical protein	-
D9C09_RS17460 (D9C09_17460)	-	3260452..3260892 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
D9C09_RS17465 (D9C09_17465)	-	3260991..3261443 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
D9C09_RS17470 (D9C09_17470)	cdiI	3261540..3261899 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
D9C09_RS17475 (D9C09_17475)	-	3262004..3262483 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=278939 D9C09_RS17440 WP_014480328.1 3256513..3257640(-) (rapC) [Bacillus subtilis subsp. subtilis strain GFR-12]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=278939 D9C09_RS17440 WP_014480328.1 3256513..3257640(-) (rapC) [Bacillus subtilis subsp. subtilis strain GFR-12]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397