Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K39_RS09075 Genome accession   NZ_CP027706
Coordinates   1915829..1916464 (+) Length   211 a.a.
NCBI ID   WP_068577997.1    Uniprot ID   A0A6G6ZX09
Organism   Pseudomonas sessilinigenes strain CMR12a     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910829..1921464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K39_RS09055 (C4K39_1848) - 1911079..1912011 (+) 933 WP_124346165.1 ABC transporter ATP-binding protein -
  C4K39_RS09060 (C4K39_1849) - 1912008..1912787 (+) 780 WP_068578002.1 ABC transporter permease -
  C4K39_RS09065 (C4K39_1850) - 1912839..1913354 (-) 516 WP_124346166.1 DUF2062 domain-containing protein -
  C4K39_RS09070 (C4K39_1851) comA 1913495..1915726 (+) 2232 WP_124346167.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K39_RS09075 (C4K39_1852) exbB 1915829..1916464 (+) 636 WP_068577997.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K39_RS09080 (C4K39_1853) - 1916461..1916889 (+) 429 WP_068577995.1 biopolymer transporter ExbD -
  C4K39_RS09085 (C4K39_1854) lpxK 1916889..1917899 (+) 1011 WP_124346168.1 tetraacyldisaccharide 4'-kinase -
  C4K39_RS09090 (C4K39_1855) - 1917924..1918109 (+) 186 WP_056836870.1 Trm112 family protein -
  C4K39_RS09095 (C4K39_1856) kdsB 1918106..1918870 (+) 765 WP_124346169.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K39_RS09100 (C4K39_1857) - 1918870..1919334 (+) 465 WP_068577989.1 low molecular weight protein-tyrosine-phosphatase -
  C4K39_RS09105 (C4K39_1858) murB 1919331..1920350 (+) 1020 WP_068577987.1 UDP-N-acetylmuramate dehydrogenase -
  C4K39_RS09110 (C4K39_1859) - 1920600..1921070 (+) 471 WP_068577985.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23063.20 Da        Isoelectric Point: 6.9829

>NTDB_id=278939 C4K39_RS09075 WP_068577997.1 1915829..1916464(+) (exbB) [Pseudomonas sessilinigenes strain CMR12a]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=278939 C4K39_RS09075 WP_068577997.1 1915829..1916464(+) (exbB) [Pseudomonas sessilinigenes strain CMR12a]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCTGCCGTGGGCATCATTGC
CGAGCGCTTGTGGACCCTGCGAGCCAGCCGTGTCACACCGCCCCATCTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGTTGCGCGCCGACTCGCCACTGGGTGAGATCCTGGCCGCAGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCGGCTGCCCGGGTCATCCACGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCTTTGCTGGGCCTGCTGGGTACGGTACTGGGGATGATCGATATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCCATGTACTGGCGGGGGGGATTTCCAAGGCGCTGATCACTACGGCG
GCCGGCCTGATGGTGGGTATTCCGTCGGTGTTCTTCCATCGCTTCCTGCAACGCCGGGTCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGATCCAGGGCGACCGCGATGTCGACCTGGCCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6ZX09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872

Multiple sequence alignment