Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C4K40_RS26990 Genome accession   NZ_CP027705
Coordinates   5847641..5848972 (+) Length   443 a.a.
NCBI ID   WP_053134623.1    Uniprot ID   -
Organism   Pseudomonas sp. CMR5c     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5842641..5853972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K40_RS26970 (C4K40_5472) pgeF 5844151..5844876 (-) 726 WP_053134616.1 peptidoglycan editing factor PgeF -
  C4K40_RS26975 (C4K40_5473) rluD 5844873..5845835 (-) 963 WP_031320555.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C4K40_RS26980 (C4K40_5474) - 5845986..5847008 (+) 1023 WP_053134619.1 outer membrane protein assembly factor BamD -
  C4K40_RS26985 (C4K40_5475) - 5847137..5847370 (+) 234 WP_053134621.1 PP0621 family protein -
  C4K40_RS26990 (C4K40_5476) pilR 5847641..5848972 (+) 1332 WP_053134623.1 sigma-54 dependent transcriptional regulator Regulator
  C4K40_RS26995 (C4K40_5477) thiO 5848969..5850081 (-) 1113 WP_053134625.1 glycine oxidase ThiO -
  C4K40_RS27000 (C4K40_5478) - 5850138..5850539 (-) 402 WP_022641078.1 type IV pilin protein -
  C4K40_RS27005 (C4K40_5479) - 5850555..5850902 (-) 348 WP_022641079.1 hypothetical protein -
  C4K40_RS27010 (C4K40_5480) - 5850889..5851362 (-) 474 WP_022641080.1 PilX N-terminal domain-containing pilus assembly protein -
  C4K40_RS27015 (C4K40_5481) - 5851362..5852072 (-) 711 WP_053134628.1 PilW family protein -
  C4K40_RS27020 (C4K40_5482) pilV 5852069..5852485 (-) 417 WP_053134631.1 type IV pilus modification protein PilV -
  C4K40_RS27025 (C4K40_5483) - 5852788..5853312 (+) 525 WP_053134634.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49440.86 Da        Isoelectric Point: 8.8297

>NTDB_id=278924 C4K40_RS26990 WP_053134623.1 5847641..5848972(+) (pilR) [Pseudomonas sp. CMR5c]
MNPRQTVLVVDGAKEVRALVEITLGRMHLHTRSARTLQEARDHLRQNRFDLCLTDLHLPDGCGLELLRHIRQEHSRVPVA
VLSDDTSQQTAASALQAGACDLLHKPLDLKHLRELVGNRLKPPVPRETSASKQLLGNSPAMADLRRQITKLAPSQAAVYI
SGESGSGKERVARLIHDLSPRARRPFIAVNCGAIPSELMESEFFGHRKGSFSGAMADQPGLFLAARGGTLFLDEVAELPL
AMQVKLLRALQEKSVRAVGSQTEEAVDLRILCATHQDLKQQVEAGRFRQDLYYRLNVIELRVPPLRERHADINLLARHIL
QRLAIDSGQTVAQLSPEALQALEAHDFPGNVRELENLLERAQVFREGQWIEVADLGLPCASRAESLPHPAATAFDLALHL
QQVERQLLLQALEACRWNRTEAARRLGLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=278924 C4K40_RS26990 WP_053134623.1 5847641..5848972(+) (pilR) [Pseudomonas sp. CMR5c]
ATGAATCCACGGCAAACGGTCCTGGTGGTCGATGGGGCCAAGGAAGTACGCGCCCTTGTGGAAATCACTCTCGGCCGGAT
GCACCTGCACACCCGCAGCGCCCGCACCTTGCAAGAAGCCCGCGACCACTTGAGGCAAAATCGTTTCGACCTGTGCCTGA
CCGACCTGCATCTGCCGGACGGCTGCGGCCTGGAACTACTGAGACACATCCGCCAGGAGCACTCCCGTGTTCCGGTGGCC
GTACTCAGCGACGATACCAGCCAGCAAACCGCTGCCAGTGCCTTGCAGGCCGGAGCCTGCGATCTGCTGCACAAACCCCT
GGATCTCAAGCATCTACGAGAGCTGGTCGGCAACCGCCTCAAGCCACCTGTGCCCCGGGAAACCTCGGCAAGCAAGCAAC
TGCTGGGCAACTCACCAGCAATGGCCGACCTGCGCCGCCAGATCACCAAGCTGGCGCCCAGCCAGGCAGCGGTCTACATC
AGCGGCGAATCCGGTAGCGGCAAGGAACGGGTCGCCCGCTTGATCCACGACCTGAGCCCCAGGGCCCGGCGACCGTTCAT
TGCGGTCAACTGTGGAGCCATCCCTTCGGAGTTGATGGAGAGCGAATTCTTCGGTCACCGCAAAGGCAGCTTCAGTGGGG
CCATGGCGGACCAGCCCGGGCTGTTCCTGGCCGCACGGGGCGGCACCCTGTTCCTCGACGAAGTAGCCGAACTGCCGCTG
GCCATGCAGGTGAAACTCCTGCGTGCCTTGCAGGAAAAGTCCGTACGGGCAGTGGGTAGCCAGACAGAGGAAGCGGTGGA
CCTCAGGATTCTGTGTGCCACCCACCAGGATCTGAAGCAGCAGGTGGAAGCCGGACGCTTCCGCCAGGATCTGTACTATC
GCCTGAACGTCATCGAACTACGGGTTCCACCCCTGCGCGAGCGCCATGCCGATATCAACCTGTTGGCCCGGCATATCCTG
CAGCGCTTGGCCATCGACAGCGGCCAGACGGTAGCCCAGCTGAGCCCGGAAGCACTGCAGGCGCTGGAGGCCCACGACTT
TCCCGGCAATGTGCGAGAACTGGAAAACCTGCTGGAACGGGCACAGGTTTTCCGCGAAGGACAATGGATAGAAGTGGCGG
ACCTCGGCCTGCCCTGCGCCAGCCGAGCGGAAAGTCTCCCGCATCCAGCCGCGACCGCGTTCGATCTGGCGCTCCACCTG
CAACAGGTGGAGCGCCAGTTGCTGCTCCAGGCGCTGGAAGCATGCCGCTGGAACCGCACGGAGGCGGCTCGCCGGCTGGG
TCTGTCGTTTCGCTCGATGCGCTATCGCTTGAAGAAACTGGGACTGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)

Sigma-54 interaction domain (Sigma54_activat)

(134-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.302

100

0.623
  pilR Acinetobacter baumannii strain A118

46.623

100

0.483
  luxO Vibrio cholerae strain A1552

37.33

99.774

0.372

Multiple sequence alignment