Detailed information NTG0278914

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K40_RS09055
• Genome accession: NZ_CP027705
• Coordinates: 1931555..1933786 (+)
• Length: 743 a.a.
• NCBI ID: WP_053135774.1
• Uniprot ID: -
• Organism: Pseudomonas sp. CMR5c
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1926555..1938786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K40_RS09030 (C4K40_1830)	-	1927681..1928340 (+)	660	WP_053135772.1	transglutaminase family protein	-
C4K40_RS09035 (C4K40_1831)	-	1928383..1929006 (+)	624	WP_031321232.1	glutathione S-transferase family protein	-
C4K40_RS09040 (C4K40_1832)	-	1929139..1930071 (+)	933	WP_022643151.1	ABC transporter ATP-binding protein	-
C4K40_RS09045 (C4K40_1833)	-	1930068..1930847 (+)	780	WP_022643152.1	ABC transporter permease	-
C4K40_RS09050 (C4K40_1834)	-	1930899..1931414 (-)	516	WP_031321234.1	DUF2062 domain-containing protein	-
C4K40_RS09055 (C4K40_1835)	comA	1931555..1933786 (+)	2232	WP_053135774.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K40_RS09060 (C4K40_1836)	exbB	1933889..1934524 (+)	636	WP_022643155.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K40_RS09065 (C4K40_1837)	-	1934521..1934949 (+)	429	WP_022643156.1	biopolymer transporter ExbD	-
C4K40_RS09070 (C4K40_1838)	lpxK	1934949..1935959 (+)	1011	WP_053135777.1	tetraacyldisaccharide 4'-kinase	-
C4K40_RS09075 (C4K40_1839)	-	1935985..1936170 (+)	186	WP_011060103.1	Trm112 family protein	-
C4K40_RS09080 (C4K40_1840)	kdsB	1936167..1936931 (+)	765	WP_053135780.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K40_RS09085 (C4K40_1841)	-	1936931..1937395 (+)	465	WP_022643158.1	low molecular weight protein-tyrosine-phosphatase	-
C4K40_RS09090 (C4K40_1842)	murB	1937392..1938417 (+)	1026	WP_022643159.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81738.11 Da
• Isoelectric Point: 11.2989

>NTDB_id=278914 C4K40_RS09055 WP_053135774.1 1931555..1933786(+) (comA) [Pseudomonas sp. CMR5c]
MRTGMLGLAAGLLALGFLPALPPLWWLLPVLVLALLLLPFRTHPVAFFLFGFSWACACAQWALDDRLASRLDGQTRWLEG
RITGLPEAGAQVVRFELQDAQARRERLPRRIRVSWRDGPPVKSGERWRLAVTLRRPVGLLNVQGFDYEAWLLARRIGAVG
TVKDGQLLAPAQGAWRDRLRQRLLAVEAHGRGGGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAGVIYLV
VAGLARLGAWPARWPWLPWACVLGFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGTWWPLLLALDAVLLLEPL
ASLQPGFWLSFAAVAILIFTFAGRLGAWRWWQSWTRAQWLIAIGLLPPMLALGLPISLSGPLANLLAVPWVSLLVLPPAL
LGSLLLPLPVVGEGLLWLAGGLLEGLFRVLGLIAGWWPAWVAPLLPGWIWSLASLGALLLLLPPGVPLRILGWPLLLLVA
WPPQPRVPFGEAEVWQLDVGQGLSFVLRTRNHAMLYDAGARSGDFDLGERVVVPTLQRLGIHQLDLMLLSHADNDHAGGA
QAVQRALPVRLVRSGEPEALPAILQAMPCESGASWQWDGVRFRQWQWAGARDGNQASCVLQVEARGERLLLTGDIDIHAE
RALLQGPLAQRTHWLQAPHHGSRTSSSMALLQRLAPDAVLVSRGRGNAFGHPHPQVVARYRSLGVALYDSAEQGALRLRL
GAFARPYSVREQRRFWREPVTMP

Nucleotide

• Length: 2232 bp

>NTDB_id=278914 C4K40_RS09055 WP_053135774.1 1931555..1933786(+) (comA) [Pseudomonas sp. CMR5c]
ATGCGAACAGGGATGCTGGGCTTGGCCGCGGGGCTTCTGGCGCTGGGTTTTCTGCCGGCCTTGCCGCCGCTCTGGTGGTT
GTTGCCGGTATTGGTGCTGGCCTTGCTGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTATTCGGCTTCAGTT
GGGCCTGTGCCTGTGCGCAGTGGGCGCTCGACGATCGGTTGGCGTCGCGCCTGGACGGCCAGACTCGCTGGCTGGAAGGA
CGGATCACCGGTTTGCCGGAGGCTGGGGCGCAGGTGGTGCGGTTCGAGTTGCAAGATGCCCAGGCCCGACGCGAGCGCCT
GCCACGGCGAATTCGCGTGAGCTGGCGTGACGGGCCGCCGGTCAAGAGCGGCGAGCGCTGGCGCCTGGCGGTGACACTGC
GCCGCCCCGTGGGATTGCTCAACGTACAGGGGTTCGACTACGAGGCGTGGCTGCTGGCGCGGCGTATCGGCGCCGTCGGT
ACGGTCAAGGATGGCCAGTTGCTGGCGCCGGCCCAGGGCGCCTGGCGCGACCGCTTGCGCCAGCGCTTGCTGGCGGTGGA
GGCCCATGGCCGGGGCGGAGGGCTGGCCGCATTGGTGATGGGGGATGGTTCCGGGCTGACGCGAGAGGACTGGCAGCTGT
TGCAAGACACCGGCACCGTGCACCTGATGGTCATTTCCGGGCAGCACATCAGCCTCTTGGCGGGGGTGATCTATCTCGTC
GTGGCGGGGCTGGCGCGGCTCGGCGCCTGGCCCGCGCGCTGGCCATGGCTGCCGTGGGCCTGTGTCCTGGGCTTTCTCGG
GGCGTTGGGCTACGGGTTGCTCGCGGGGTTCGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCCCTGGTCCTGCTCT
GGCGCTTGCGCTTTCGTCACCTGGGCACTTGGTGGCCGCTGCTGCTGGCGCTGGATGCGGTGCTGTTGCTCGAACCCCTG
GCCAGCTTGCAACCGGGTTTCTGGCTGTCGTTCGCGGCGGTGGCGATCCTGATCTTCACCTTCGCCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGAGCTGGACCCGCGCCCAATGGCTGATAGCGATCGGCCTGCTGCCGCCGATGCTGGCCCTGGGCC
TGCCCATCAGTCTCAGCGGTCCGCTGGCCAACCTGCTGGCGGTGCCTTGGGTCAGCCTGCTGGTGTTGCCGCCGGCTTTG
CTGGGAAGCCTGTTGTTGCCCCTGCCAGTGGTGGGCGAAGGCTTGTTGTGGCTGGCCGGTGGGCTGCTGGAGGGACTGTT
CCGTGTGCTGGGGCTGATCGCCGGATGGTGGCCGGCCTGGGTCGCGCCGCTGTTGCCCGGCTGGATCTGGAGCCTCGCCA
GTCTGGGGGCGTTGTTGCTGTTGCTGCCGCCCGGCGTGCCGCTGCGGATTCTCGGCTGGCCGCTGTTGCTGTTGGTGGCC
TGGCCGCCGCAGCCTCGAGTGCCCTTCGGCGAGGCCGAAGTCTGGCAGCTGGATGTGGGCCAGGGGCTGTCGTTCGTCCT
GCGTACCCGTAACCACGCGATGCTGTACGACGCGGGCGCCCGTAGCGGCGATTTCGACCTCGGCGAGCGGGTAGTGGTGC
CGACCCTGCAGCGCTTGGGCATCCACCAGCTGGACCTGATGTTGCTCAGCCATGCCGATAACGATCATGCCGGTGGCGCC
CAGGCGGTGCAGCGGGCGTTGCCGGTTCGCCTGGTGCGTAGTGGCGAGCCCGAGGCATTGCCGGCCATCCTGCAAGCCAT
GCCGTGCGAGTCCGGGGCGAGCTGGCAATGGGATGGCGTGCGTTTCCGCCAGTGGCAATGGGCAGGGGCGCGCGATGGCA
ACCAGGCTTCCTGTGTGTTGCAGGTCGAGGCCCGGGGTGAGCGCCTGCTGCTCACTGGCGACATCGATATCCATGCGGAG
CGGGCTTTGCTCCAGGGCCCGCTGGCGCAGCGGACCCATTGGTTGCAGGCGCCGCACCATGGCAGCCGGACCTCTTCGTC
CATGGCCCTGCTACAACGGTTGGCGCCCGACGCGGTACTGGTTTCCCGGGGCCGGGGCAATGCCTTCGGTCACCCGCACC
CGCAGGTGGTGGCGCGTTACCGGAGCCTGGGCGTGGCGCTTTATGACAGTGCCGAGCAGGGCGCGTTGAGGTTGCGCCTG
GGGGCTTTTGCGCGGCCCTACAGCGTGCGCGAGCAACGGCGGTTCTGGCGTGAGCCGGTAACAATGCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-462)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.256	96.77	0.622
comA	Ralstonia pseudosolanacearum GMI1000	32.113	100	0.366