Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K40_RS09060 Genome accession   NZ_CP027705
Coordinates   1933889..1934524 (+) Length   211 a.a.
NCBI ID   WP_022643155.1    Uniprot ID   -
Organism   Pseudomonas sp. CMR5c     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1928889..1939524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K40_RS09040 (C4K40_1832) - 1929139..1930071 (+) 933 WP_022643151.1 ABC transporter ATP-binding protein -
  C4K40_RS09045 (C4K40_1833) - 1930068..1930847 (+) 780 WP_022643152.1 ABC transporter permease -
  C4K40_RS09050 (C4K40_1834) - 1930899..1931414 (-) 516 WP_031321234.1 DUF2062 domain-containing protein -
  C4K40_RS09055 (C4K40_1835) comA 1931555..1933786 (+) 2232 WP_053135774.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K40_RS09060 (C4K40_1836) exbB 1933889..1934524 (+) 636 WP_022643155.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K40_RS09065 (C4K40_1837) - 1934521..1934949 (+) 429 WP_022643156.1 biopolymer transporter ExbD -
  C4K40_RS09070 (C4K40_1838) lpxK 1934949..1935959 (+) 1011 WP_053135777.1 tetraacyldisaccharide 4'-kinase -
  C4K40_RS09075 (C4K40_1839) - 1935985..1936170 (+) 186 WP_011060103.1 Trm112 family protein -
  C4K40_RS09080 (C4K40_1840) kdsB 1936167..1936931 (+) 765 WP_053135780.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K40_RS09085 (C4K40_1841) - 1936931..1937395 (+) 465 WP_022643158.1 low molecular weight protein-tyrosine-phosphatase -
  C4K40_RS09090 (C4K40_1842) murB 1937392..1938417 (+) 1026 WP_022643159.1 UDP-N-acetylmuramate dehydrogenase -
  C4K40_RS09095 (C4K40_1843) - 1938660..1939130 (+) 471 WP_022643160.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22948.06 Da        Isoelectric Point: 6.9826

>NTDB_id=278915 C4K40_RS09060 WP_022643155.1 1933889..1934524(+) (exbB) [Pseudomonas sp. CMR5c]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGAA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=278915 C4K40_RS09060 WP_022643155.1 1933889..1934524(+) (exbB) [Pseudomonas sp. CMR5c]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCGGCCGTGGGCATCATCGC
CGAGCGCTTGTGGACCCTGCGGGCCAGCCGTGTGACCCCGCCCCACCTCCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAACTGCGTGCCGATTCGCCCCTGGGCGAGATCCTGGCCGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAAGCGGCGGCCCGGGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTATTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCCATGTGCTGGCCGGAGGTATCTCCAAGGCCCTGATCACCACCGCT
GCGGGCCTGATGGTGGGGATCCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCCGAGGGCGCAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872

Multiple sequence alignment