Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C6568_RS11975 Genome accession   NZ_CP027667
Coordinates   2550183..2551643 (-) Length   486 a.a.
NCBI ID   WP_106684319.1    Uniprot ID   A0A2R3QDP8
Organism   Melaminivora suipulveris strain SC2-9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2545183..2556643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6568_RS11960 (C6568_11960) - 2547974..2548303 (+) 330 WP_158702878.1 BTAD domain-containing putative transcriptional regulator -
  C6568_RS11965 (C6568_11965) - 2548462..2549523 (+) 1062 WP_158702879.1 hypothetical protein -
  C6568_RS11970 (C6568_11970) ampD 2549588..2550202 (-) 615 WP_106684318.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  C6568_RS11975 (C6568_11975) pilR 2550183..2551643 (-) 1461 WP_106684319.1 sigma-54-dependent transcriptional regulator Regulator
  C6568_RS11980 (C6568_11980) - 2551657..2553351 (-) 1695 WP_106685489.1 sensor histidine kinase -
  C6568_RS11985 (C6568_11985) - 2553344..2553571 (-) 228 WP_418287992.1 PP0621 family protein -
  C6568_RS11990 (C6568_11990) - 2553568..2554365 (-) 798 WP_106684321.1 cytochrome C assembly family protein -
  C6568_RS11995 (C6568_11995) ffh 2554445..2555827 (+) 1383 WP_106685490.1 signal recognition particle protein -
  C6568_RS12000 (C6568_12000) - 2555870..2556433 (+) 564 WP_106684322.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 51996.03 Da        Isoelectric Point: 5.9770

>NTDB_id=278835 C6568_RS11975 WP_106684319.1 2550183..2551643(-) (pilR) [Melaminivora suipulveris strain SC2-9]
MTASTASILVVDDEPDLRTLYELTLLREGYRVETAASVAEAREQLAQHSFDAVITDMRLPDGFGMDVLTLLRDEQRPERC
VVMTAYGSAENAVEALRTGAFDYLTKPVDLKQFRAVVASAVQGVGGVPTPQRAGRAGSARTGTEASNAALQRLIGESAAM
RAVKERIAKVARSMAPVLVRGESGTGKELVARALHASSQRAGGPLVAVNCGAIPENLLEAEFFGARKGSYTGATQDREGY
FQAARGGTLFLDEIGDLPLAMQSKLLRAIQERSVRPLGSTQEEAVDVRIVSATHRDLAADVQAGRFRQDLYYRLNVIELL
IPPLRERREDLPALCAHLLARIAQESGAPVAQLSGQALAQLARHPLSGNVRELENLLHRAVALGEGAQLDLDAAAPLAAA
AQTPPAPAAPAAAAPATPTPLPSDLQGWLDQQEREILIRALHACGYNRTATATRLGISLRQIRYRIDRLNIPLPQGGEAA
DDTPES

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=278835 C6568_RS11975 WP_106684319.1 2550183..2551643(-) (pilR) [Melaminivora suipulveris strain SC2-9]
ATGACTGCCTCCACCGCCTCCATCCTCGTGGTCGACGACGAGCCCGACCTGCGCACCCTCTACGAATTGACACTGCTGCG
CGAGGGCTATCGCGTGGAAACCGCCGCCAGCGTCGCCGAGGCGCGCGAGCAGCTCGCGCAGCACAGCTTCGACGCCGTCA
TCACCGACATGCGTCTGCCCGACGGCTTCGGCATGGACGTGCTCACGCTGCTGCGCGACGAGCAGCGGCCCGAGCGCTGT
GTGGTCATGACGGCCTACGGCTCGGCCGAGAACGCTGTCGAGGCGCTGCGCACCGGCGCCTTCGACTACCTGACCAAGCC
CGTCGATCTCAAGCAATTTCGCGCCGTCGTTGCCTCCGCCGTGCAGGGGGTCGGCGGCGTGCCGACGCCGCAGCGCGCCG
GGCGTGCGGGCTCCGCGCGCACGGGGACGGAGGCGTCCAACGCGGCGCTGCAGCGCCTGATTGGCGAGTCCGCTGCCATG
CGCGCCGTCAAGGAGCGCATCGCCAAAGTGGCGCGCAGCATGGCGCCGGTGCTGGTGCGCGGCGAATCGGGCACCGGCAA
GGAACTGGTGGCGCGCGCGTTGCACGCCAGCAGCCAGCGCGCCGGCGGGCCGCTGGTGGCGGTGAACTGCGGTGCCATCC
CCGAGAACCTGCTGGAGGCCGAGTTCTTCGGCGCGCGCAAGGGCTCCTACACCGGCGCCACGCAGGACCGCGAGGGCTAC
TTCCAGGCAGCGCGCGGCGGCACGCTGTTCCTGGACGAGATCGGCGACCTGCCGCTGGCCATGCAGTCCAAGCTGCTGCG
CGCCATCCAGGAGCGCAGCGTACGCCCGCTGGGCTCCACGCAGGAGGAGGCGGTGGACGTGCGCATCGTCAGCGCCACGC
ACCGCGACCTGGCGGCCGACGTGCAGGCTGGGCGCTTCCGCCAGGACCTGTACTACCGGCTGAACGTGATCGAGCTCCTG
ATCCCGCCGCTGCGCGAGCGGCGCGAGGACCTGCCCGCGCTGTGCGCCCATCTGCTCGCGCGCATCGCGCAGGAAAGCGG
CGCGCCGGTGGCGCAGCTGTCCGGGCAGGCGCTGGCGCAGCTGGCGCGGCACCCTTTGAGCGGCAACGTGCGCGAGCTGG
AGAACCTGCTGCACCGCGCCGTGGCCCTGGGCGAGGGCGCGCAGCTCGACCTGGACGCCGCCGCGCCGCTGGCCGCCGCT
GCGCAAACTCCACCCGCGCCTGCCGCCCCCGCCGCAGCGGCGCCGGCCACGCCCACGCCCCTGCCCAGCGACCTGCAGGG
CTGGCTGGACCAGCAGGAGCGCGAGATCCTGATCCGCGCCCTGCACGCCTGCGGCTACAACCGCACGGCCACGGCCACGC
GCCTGGGCATCAGTCTGCGTCAGATCCGCTACCGCATCGACCGGCTGAACATCCCCCTGCCCCAGGGCGGCGAGGCGGCG
GATGACACGCCGGAGTCCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(429-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(153-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3QDP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.74

97.325

0.494
  pilR Acinetobacter baumannii strain A118

43.008

97.119

0.418

Multiple sequence alignment