Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   D5S13_RS11360 Genome accession   NZ_CP032821
Coordinates   2265498..2266487 (+) Length   329 a.a.
NCBI ID   WP_000219066.1    Uniprot ID   P67655
Organism   Staphylococcus aureus strain JDFM SA01     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2260498..2271487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5S13_RS11335 (D5S13_02166) - 2261238..2261729 (+) 492 WP_000383814.1 DUF948 domain-containing protein -
  D5S13_RS11340 (D5S13_02167) - 2261803..2263167 (+) 1365 WP_000193943.1 hypothetical protein -
  D5S13_RS11345 - 2263323..2263406 (+) 84 WP_031789490.1 hypothetical protein -
  D5S13_RS11350 (D5S13_02168) - 2263867..2264958 (+) 1092 WP_000066378.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  D5S13_RS11355 - 2265312..2265425 (+) 114 WP_001803513.1 hypothetical protein -
  D5S13_RS11360 (D5S13_02169) ccpA 2265498..2266487 (+) 990 WP_000219066.1 catabolite control protein A Regulator
  D5S13_RS11365 (D5S13_02170) - 2266585..2267754 (-) 1170 WP_001184007.1 acetoin utilization protein AcuC -
  D5S13_RS11370 (D5S13_02171) - 2267779..2268411 (-) 633 WP_001015996.1 hypothetical protein -
  D5S13_RS11375 (D5S13_02172) acsA 2268580..2270286 (+) 1707 WP_000862083.1 acetate--CoA ligase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36060.24 Da        Isoelectric Point: 5.5054

>NTDB_id=278792 D5S13_RS11360 WP_000219066.1 2265498..2266487(+) (ccpA) [Staphylococcus aureus strain JDFM SA01]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=278792 D5S13_RS11360 WP_000219066.1 2265498..2266487(+) (ccpA) [Staphylococcus aureus strain JDFM SA01]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCAGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGAAGGTTTAACTGAAGTGTTAAATAAAAATGGTCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCCAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATTATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGTTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCAAATGTAGTTTTACCTCAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P67655

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462