Detailed information NTG0278656

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C6Q18_RS26450
• Genome accession: NZ_CP027656
• Coordinates: 5888394..5889722 (+)
• Length: 442 a.a.
• NCBI ID: WP_025807533.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ZJU60
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5883394..5894722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Q18_RS26430 (C6Q18_26425)	pgeF	5884892..5885617 (-)	726	WP_106698672.1	peptidoglycan editing factor PgeF	-
C6Q18_RS26435 (C6Q18_26430)	rluD	5885614..5886576 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C6Q18_RS26440 (C6Q18_26435)	-	5886729..5887751 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C6Q18_RS26445 (C6Q18_26440)	-	5887886..5888119 (+)	234	WP_025807532.1	PP0621 family protein	-
C6Q18_RS26450 (C6Q18_26445)	pilR	5888394..5889722 (+)	1329	WP_025807533.1	sigma-54-dependent transcriptional regulator	Regulator
C6Q18_RS26455 (C6Q18_26450)	thiO	5889719..5890819 (-)	1101	WP_025807534.1	glycine oxidase ThiO	-
C6Q18_RS26460 (C6Q18_26455)	-	5890874..5891275 (-)	402	WP_097305151.1	type IV pilin protein	-
C6Q18_RS26465 (C6Q18_26460)	-	5891289..5894360 (-)	3072	WP_106698673.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48916.17 Da
• Isoelectric Point: 8.0654

>NTDB_id=278656 C6Q18_RS26450 WP_025807533.1 5888394..5889722(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARNLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQETAVQALKAGAIDFLSKPVVLARLHELLNGALPGSTPANPATGPLLGDSTAMHKLREQIGKLAQSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=278656 C6Q18_RS26450 WP_025807533.1 5888394..5889722(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCAACCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACTGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGTTGGCG
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTTCTGAGCAAACCCGT
GGTCCTGGCGCGCCTGCACGAGCTGTTGAATGGCGCCCTGCCCGGATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCATAAACTGCGCGAGCAGATCGGCAAGCTGGCCCAGAGTCAGGCATCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGACCACGAGCCAGCCACGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTCCAGGAGAAGGCGGTACGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGGCGTTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAACTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGATATCGAGCCCTTGGCCACAGCCATCCTCGAG
CGACTGGCGCAGGGCGACGGCCAACAACTGGCACGGCTTCAGCCAAGTGCTCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.556	100	0.688
pilR	Acinetobacter baumannii strain A118	44.227	100	0.459