Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SPYM_RS01700 | Genome accession | NC_009332 |
| Coordinates | 322608..323099 (+) | Length | 163 a.a. |
| NCBI ID | WP_002993238.1 | Uniprot ID | A0A9X5LZM9 |
| Organism | Streptococcus pyogenes str. Manfredo | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 317608..328099
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPYM_RS01670 (SpyM50290) | - | 318797..319297 (+) | 501 | WP_011018191.1 | phosphatase PAP2 family protein | - |
| SPYM_RS01675 (SpyM50291) | trxA | 319360..319692 (+) | 333 | WP_256363924.1 | thioredoxin | - |
| SPYM_RS01680 (SpyM50292) | - | 319744..320331 (-) | 588 | WP_011018189.1 | helix-turn-helix domain-containing protein | - |
| SPYM_RS01685 (SpyM50293) | mutY | 320508..321662 (-) | 1155 | WP_162009222.1 | A/G-specific adenine glycosylase | - |
| SPYM_RS01690 (SpyM50294) | - | 321830..322123 (+) | 294 | WP_002983113.1 | hypothetical protein | - |
| SPYM_RS01695 (SpyM50295) | rpsF | 322296..322586 (+) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| SPYM_RS01700 (SpyM50296) | ssbA | 322608..323099 (+) | 492 | WP_002993238.1 | single-stranded DNA-binding protein | Machinery gene |
| SPYM_RS01705 (SpyM50297) | rpsR | 323264..323503 (+) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| SPYM_RS01710 (SpyM50298) | - | 323634..324290 (-) | 657 | WP_002983144.1 | DUF1129 domain-containing protein | - |
| SPYM_RS01715 (SpyM50299) | - | 324423..325367 (-) | 945 | WP_011888617.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17995.78 Da Isoelectric Point: 4.8894
>NTDB_id=27849 SPYM_RS01700 WP_002993238.1 322608..323099(+) (ssbA) [Streptococcus pyogenes str. Manfredo]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=27849 SPYM_RS01700 WP_002993238.1 322608..323099(+) (ssbA) [Streptococcus pyogenes str. Manfredo]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.621 |
100 |
0.626 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.302 |
100 |
0.626 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |