Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AM480_RS04555 Genome accession   NZ_CP027611
Coordinates   916134..916952 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AR_0101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 911134..921952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM480_RS04540 (AM480_04540) pilE 911351..911776 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  AM480_RS04545 (AM480_04545) pilY2 911773..912255 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  AM480_RS04550 (AM480_04550) pilY1 912268..916122 (-) 3855 WP_213065396.1 PilC/PilY family type IV pilus protein Machinery gene
  AM480_RS04555 (AM480_04555) pilX 916134..916952 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AM480_RS04560 (AM480_04560) pilW 916949..917950 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  AM480_RS04565 (AM480_04565) pilV 917951..918511 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AM480_RS04570 (AM480_04570) fimU 918505..918978 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AM480_RS04575 (AM480_04575) ispH 919148..920098 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AM480_RS04580 (AM480_04580) gmk 920221..920850 (+) 630 WP_000015937.1 guanylate kinase -
  AM480_RS04585 (AM480_04585) rpoZ 920923..921201 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AM480_RS04590 (AM480_04590) - 921240..921370 (+) 131 Protein_869 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=278472 AM480_RS04555 WP_000149374.1 916134..916952(-) (pilX) [Acinetobacter baumannii strain AR_0101]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=278472 AM480_RS04555 WP_000149374.1 916134..916952(-) (pilX) [Acinetobacter baumannii strain AR_0101]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment