Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPYM_RS01335 Genome accession   NC_009332
Coordinates   254053..254979 (+) Length   308 a.a.
NCBI ID   WP_002986004.1    Uniprot ID   Q1JNF8
Organism   Streptococcus pyogenes str. Manfredo     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 249053..259979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS01325 (SpyM50227) amiA 250516..252486 (+) 1971 WP_011017333.1 peptide ABC transporter substrate-binding protein Regulator
  SPYM_RS01330 (SpyM50228) amiC 252551..254053 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  SPYM_RS01335 (SpyM50229) amiD 254053..254979 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  SPYM_RS01340 (SpyM50230) amiE 254988..256058 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  SPYM_RS01345 (SpyM50231) amiF 256051..256974 (+) 924 WP_002986000.1 ATP-binding cassette domain-containing protein Regulator
  SPYM_RS10140 - 257012..257095 (-) 84 Protein_224 IS3 family transposase -
  SPYM_RS09915 - 257122..257301 (-) 180 WP_111695866.1 transposase -
  SPYM_RS09960 - 257599..258611 (-) 1013 Protein_226 IS3 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34862.81 Da        Isoelectric Point: 8.5670

>NTDB_id=27845 SPYM_RS01335 WP_002986004.1 254053..254979(+) (amiD) [Streptococcus pyogenes str. Manfredo]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=27845 SPYM_RS01335 WP_002986004.1 254053..254979(+) (amiD) [Streptococcus pyogenes str. Manfredo]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATCGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGCATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTGCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment