Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GTNG_RS12270 | Genome accession | NC_009328 |
| Coordinates | 2489088..2490158 (-) | Length | 356 a.a. |
| NCBI ID | WP_029760727.1 | Uniprot ID | - |
| Organism | Geobacillus thermodenitrificans NG80-2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2484088..2495158
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTNG_RS12230 (GTNG_2366) | - | 2484921..2485715 (+) | 795 | WP_011887796.1 | YqhG family protein | - |
| GTNG_RS12235 (GTNG_2367) | - | 2485792..2485971 (-) | 180 | WP_008879845.1 | YqzE family protein | - |
| GTNG_RS12240 (GTNG_2368) | comGG | 2486017..2486406 (-) | 390 | WP_008879846.1 | competence type IV pilus minor pilin ComGG | - |
| GTNG_RS12245 (GTNG_2369) | comGF | 2486540..2486983 (-) | 444 | WP_041264567.1 | competence type IV pilus minor pilin ComGF | - |
| GTNG_RS12250 (GTNG_2370) | - | 2486962..2487288 (-) | 327 | WP_011887799.1 | hypothetical protein | - |
| GTNG_RS12255 (GTNG_2371) | comGD | 2487272..2487709 (-) | 438 | WP_008879849.1 | competence type IV pilus minor pilin ComGD | - |
| GTNG_RS12260 (GTNG_2372) | comGC | 2487699..2487995 (-) | 297 | WP_011887800.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GTNG_RS12265 (GTNG_2373) | comGB | 2488063..2489091 (-) | 1029 | WP_011887801.1 | competence type IV pilus assembly protein ComGB | - |
| GTNG_RS12270 (GTNG_2374) | comGA | 2489088..2490158 (-) | 1071 | WP_029760727.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GTNG_RS12275 (GTNG_2375) | - | 2490358..2491056 (+) | 699 | WP_011887803.1 | helix-turn-helix transcriptional regulator | - |
| GTNG_RS12280 (GTNG_2376) | - | 2491220..2491462 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GTNG_RS12285 (GTNG_2377) | - | 2491493..2492620 (-) | 1128 | WP_011887804.1 | class I SAM-dependent methyltransferase | - |
| GTNG_RS12290 (GTNG_2378) | - | 2492852..2493484 (-) | 633 | WP_041264569.1 | MBL fold metallo-hydrolase | - |
| GTNG_RS18335 (GTNG_2379) | - | 2493664..2493840 (+) | 177 | WP_008879857.1 | DUF2759 domain-containing protein | - |
| GTNG_RS12300 (GTNG_2380) | - | 2493876..2495039 (-) | 1164 | WP_011887806.1 | M14 family metallocarboxypeptidase | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 39595.73 Da Isoelectric Point: 8.6314
>NTDB_id=27808 GTNG_RS12270 WP_029760727.1 2489088..2490158(-) (comGA) [Geobacillus thermodenitrificans NG80-2]
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
Nucleotide
Download Length: 1071 bp
>NTDB_id=27808 GTNG_RS12270 WP_029760727.1 2489088..2490158(-) (comGA) [Geobacillus thermodenitrificans NG80-2]
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGTATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAACGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGTTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCACATCTGACATTAGCACGCCTCATCCGCAAAGGAATCGCACTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGTATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAACGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGTTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCACATCTGACATTAGCACGCCTCATCCGCAAAGGAATCGCACTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
51.585 |
97.472 |
0.503 |
| pilB | Glaesserella parasuis strain SC1401 |
37.83 |
95.787 |
0.362 |