Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | GTNG_RS12260 | Genome accession | NC_009328 |
| Coordinates | 2487699..2487995 (-) | Length | 98 a.a. |
| NCBI ID | WP_011887800.1 | Uniprot ID | A4IQW3 |
| Organism | Geobacillus thermodenitrificans NG80-2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2482699..2492995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTNG_RS12225 (GTNG_2365) | - | 2483270..2484934 (+) | 1665 | WP_011887795.1 | DEAD/DEAH box helicase | - |
| GTNG_RS12230 (GTNG_2366) | - | 2484921..2485715 (+) | 795 | WP_011887796.1 | YqhG family protein | - |
| GTNG_RS12235 (GTNG_2367) | - | 2485792..2485971 (-) | 180 | WP_008879845.1 | YqzE family protein | - |
| GTNG_RS12240 (GTNG_2368) | comGG | 2486017..2486406 (-) | 390 | WP_008879846.1 | competence type IV pilus minor pilin ComGG | - |
| GTNG_RS12245 (GTNG_2369) | comGF | 2486540..2486983 (-) | 444 | WP_041264567.1 | competence type IV pilus minor pilin ComGF | - |
| GTNG_RS12250 (GTNG_2370) | - | 2486962..2487288 (-) | 327 | WP_011887799.1 | hypothetical protein | - |
| GTNG_RS12255 (GTNG_2371) | comGD | 2487272..2487709 (-) | 438 | WP_008879849.1 | competence type IV pilus minor pilin ComGD | - |
| GTNG_RS12260 (GTNG_2372) | comGC | 2487699..2487995 (-) | 297 | WP_011887800.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GTNG_RS12265 (GTNG_2373) | comGB | 2488063..2489091 (-) | 1029 | WP_011887801.1 | competence type IV pilus assembly protein ComGB | - |
| GTNG_RS12270 (GTNG_2374) | comGA | 2489088..2490158 (-) | 1071 | WP_029760727.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GTNG_RS12275 (GTNG_2375) | - | 2490358..2491056 (+) | 699 | WP_011887803.1 | helix-turn-helix transcriptional regulator | - |
| GTNG_RS12280 (GTNG_2376) | - | 2491220..2491462 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GTNG_RS12285 (GTNG_2377) | - | 2491493..2492620 (-) | 1128 | WP_011887804.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10855.74 Da Isoelectric Point: 6.2096
>NTDB_id=27807 GTNG_RS12260 WP_011887800.1 2487699..2487995(-) (comGC) [Geobacillus thermodenitrificans NG80-2]
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINDKGCEAFLSMVQAQVKAYEMEHNKIPTVQQLLDGRYIKSDKCP
NGHAIKINENGDVSEIGS
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINDKGCEAFLSMVQAQVKAYEMEHNKIPTVQQLLDGRYIKSDKCP
NGHAIKINENGDVSEIGS
Nucleotide
Download Length: 297 bp
>NTDB_id=27807 GTNG_RS12260 WP_011887800.1 2487699..2487995(-) (comGC) [Geobacillus thermodenitrificans NG80-2]
ATGAACGAAAAAGGGTTTACACTTATTGAAATGCTCATTGTGTTAATGGTCATTTCAGTGTTGCTGTTAGTTGCGATTCC
AAACATCACAAAGCATAACGGCATGATTAACGACAAAGGATGTGAGGCGTTTTTGAGCATGGTACAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTTCAACAATTGCTTGATGGCCGTTATATTAAATCGGACAAATGCCCG
AACGGTCATGCGATCAAAATTAACGAGAATGGCGATGTGAGCGAAATTGGCTCGTAA
ATGAACGAAAAAGGGTTTACACTTATTGAAATGCTCATTGTGTTAATGGTCATTTCAGTGTTGCTGTTAGTTGCGATTCC
AAACATCACAAAGCATAACGGCATGATTAACGACAAAGGATGTGAGGCGTTTTTGAGCATGGTACAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTTCAACAATTGCTTGATGGCCGTTATATTAAATCGGACAAATGCCCG
AACGGTCATGCGATCAAAATTAACGAGAATGGCGATGTGAGCGAAATTGGCTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
55.172 |
88.776 |
0.49 |
| comGC | Staphylococcus aureus MW2 |
41.935 |
94.898 |
0.398 |
| comGC | Staphylococcus aureus N315 |
41.935 |
94.898 |
0.398 |