Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   PA268_RS14680 Genome accession   NZ_CP032761
Coordinates   2955456..2957432 (+) Length   658 a.a.
NCBI ID   WP_009459603.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2950456..2962432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA268_RS14665 (PA268_14410) - 2951535..2952701 (-) 1167 WP_223656181.1 glutathione-independent formaldehyde dehydrogenase -
  PA268_RS14670 (PA268_14415) - 2953216..2954157 (-) 942 WP_009459599.1 LysR family transcriptional regulator -
  PA268_RS14675 (PA268_14420) - 2954650..2955081 (+) 432 WP_009459601.1 DUF488 domain-containing protein -
  PA268_RS14680 (PA268_14425) uvrB 2955456..2957432 (+) 1977 WP_009459603.1 excinuclease ABC subunit UvrB Machinery gene
  PA268_RS14685 (PA268_14430) - 2957583..2958041 (-) 459 WP_240128801.1 LysR substrate-binding domain-containing protein -
  PA268_RS14690 (PA268_14435) - 2958121..2961087 (-) 2967 WP_121136784.1 Tn3 family transposase -
  PA268_RS14695 (PA268_14440) - 2961091..2961651 (-) 561 WP_034115140.1 recombinase family protein -
  PA268_RS14700 (PA268_14445) - 2961909..2962343 (-) 435 WP_032490487.1 mercury resistance transcriptional regulator MerR -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74219.38 Da        Isoelectric Point: 5.3150

>NTDB_id=277884 PA268_RS14680 WP_009459603.1 2955456..2957432(+) (uvrB) [Pseudomonas aeruginosa strain 268]
MSTGTFILHSSYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYGEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPEAYRALQI
ALSPGVKLNQRELIRRLALLQYDRTERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDSVASVQWLDPVTGKTLGAID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMREVGYCSGMENYSCYFSERDPA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKETLIDYGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDY
ELRVSKDRVVEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVARNENGKAILYADAVTP
AMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRRQLDGLYRQFIYI

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=277884 PA268_RS14680 WP_009459603.1 2955456..2957432(+) (uvrB) [Pseudomonas aeruginosa strain 268]
ATGTCAACCGGTACGTTCATTCTGCACTCCAGCTATACGCCGGCGGGGGACCAGCCAGAGGCGATAGCGCGCCTGCTATC
GGACATAGAAGAAGGTGCGACACACCAGACGCTGAAGGGTATCACCGGCTCTGGTAAGACCTTTACGATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCCACGTTGATCTTGGCTCCTAACAAGACATTGACCGCGCAGCTTTATGGTGAAATGAAGCAC
TTCTTTCCTGAGAATGCTGTCGAGTACTTCGTTTCCTACTACGATTATTTTCAGCCCGAGATTTATATGCCGGGCACCGA
TCGTTTCATTCCAAAGGACTCGGCCATCAACGATCACCTTGAGCGCCTACGCCTGTCCACGACCAAATCCTTGATTGAGC
GCCGCGATGTGATCGTCGTCGCTTCGGTGTCTTCAATCTACGGCCTGGGTGACCCGGAGGCGTACCGAGCGTTGCAGATC
GCTCTGTCCCCTGGGGTCAAACTAAACCAGAGAGAGCTGATTCGTCGTTTGGCTCTGCTGCAATATGATCGCACTGAGCG
CACTCTCAAACGTGCAACGTTTCGCGCTCAAGGTGATGTGATCGATATCTTTCCTGCTGATTCCGAGCATAGGGCAGTTC
GGGTGGAACTGCTGGATGACTCTGTTGCGTCTGTTCAATGGCTAGACCCTGTTACAGGTAAAACGCTTGGGGCAATTGAC
CATTACTTGGTTTCGCCAAAGACGCTTTTTGCACCGCCCACGAATAAAATAGATTCCGCGTCCAAGAAGATACTCGCTGA
TATGGAAGAGCGGGTTGCCGAGCTGAACAGGAATAATCGCTTGGTCGAGGCAAACAGGCTGTACGAGCGGATCACGCATG
ACGTGGAGATGATGCGCGAGGTAGGCTATTGTTCGGGCATGGAAAATTATTCCTGCTACTTCAGCGAACGGGACCCGGCC
TCGCCTCCGATCACATTGCTGGATTACCTGCCGAAAGATGGGCTTCTGTTCGTCGATGAATCCCACGTCATGGTGCCACA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGAGACGTTGATAGATTACGGGTTCCGCTTGCCTTCGTCTAAGA
ACAATCGCCCGTTGAACTTTGGTGAATTTGAGAAGGTCAAGCCTCAGACCATCTTTGTTTCCGCTACTCCGGGAGACTAC
GAGCTGAGGGTGTCGAAAGACAGGGTTGTCGAACAAGTTATCAGACCAACGGGACTGCTTGATCCCAAGGTTGAGGTGCG
GAAAGCGGACGGATACATAGATGACCTGCTTGCCGAAATATCGAAGTGCGTGAAGAAGAAAAATCGCGTGCTCGTGACTA
CGCTGACGAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACAACGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAAGCGGAGGATCGTGTTGAGATCATCAATGGCCTGCGCGCAGGAGAGTTCGATGTTTTGATTGGGATTAGTCTTTT
GCGCGAAGGGCTGGATATTCCAGAGGCATCATTGGTTGCTATTCTCGATGCAGACCGTGCAGGATTCTTGCGTTCGGCCC
ATGCTCTCATTCAGATGATAGGTCGAGTCGCTCGGAATGAAAACGGCAAGGCGATCTTGTACGCCGACGCGGTGACTCCG
GCGATGAAACAGGCGATCGATGAAACCAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAGGAAAATGGGATTTCTCC
GGCCTCGTCTGTGCGAAAACTAGCAGGAGAAGAGACGAATACGGAGGAGCCCACCGTTCACTCCGAGGCTTTCTGCGAGA
ATTTGTCCGACCTTTGCGATCAGATCACTGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGACGAGCAGCGC
GTCGAAGATATTCGTCGTCAGTTGGATGGTTTGTACCGGCAATTCATTTACATCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-114)

Ultra-violet resistance protein B (UvrB)

(553-593)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

UvrB interaction domain (UvrB_inter)

(160-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae R6

52.462

89.514

0.47
  uvrB Streptococcus pneumoniae D39

52.462

89.514

0.47