Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D7A46_RS06270 Genome accession   NZ_CP032743
Coordinates   1178573..1179238 (+) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain C25     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173573..1184238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7A46_RS06255 (D7A46_06250) - 1176392..1177198 (+) 807 WP_001237344.1 peptidoglycan DD-metalloendopeptidase family protein -
  D7A46_RS06260 (D7A46_06255) - 1177195..1177620 (-) 426 WP_001026230.1 GNAT family N-acetyltransferase -
  D7A46_RS06265 (D7A46_06260) - 1177712..1178134 (-) 423 WP_001195082.1 OsmC family protein -
  D7A46_RS19730 - 1178213..1178332 (-) 120 Protein_1129 hypothetical protein -
  D7A46_RS06270 (D7A46_06265) crp 1178573..1179238 (+) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  D7A46_RS06275 (D7A46_06270) - 1179295..1180385 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  D7A46_RS06280 (D7A46_06275) - 1180630..1181244 (+) 615 Protein_1132 aldo/keto reductase -
  D7A46_RS06285 (D7A46_06280) - 1181289..1181993 (+) 705 WP_001067855.1 IS6-like element IS26 family transposase -
  D7A46_RS06295 (D7A46_06290) - 1182033..1182473 (+) 441 WP_014839977.1 TetR/AcrR family transcriptional regulator -
  D7A46_RS06300 (D7A46_06295) - 1182493..1183281 (+) 789 WP_014839978.1 transcriptional regulator -
  D7A46_RS06305 (D7A46_06300) - 1183281..1183799 (+) 519 WP_014839979.1 FidL-like protein -
  D7A46_RS06310 (D7A46_06305) - 1183804..1184220 (-) 417 WP_014839980.1 fosfomycin resistance glutathione transferase FosA3 -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=277786 D7A46_RS06270 WP_000203219.1 1178573..1179238(+) (crp) [Acinetobacter baumannii strain C25]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=277786 D7A46_RS06270 WP_000203219.1 1178573..1179238(+) (crp) [Acinetobacter baumannii strain C25]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425

Multiple sequence alignment