Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C6Y19_RS00040 Genome accession   NZ_CP027517
Coordinates   9103..9615 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain AUSMDU00004024     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1374..16164 9103..9615 within 0


Gene organization within MGE regions


Location: 1374..16164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y19_RS00010 dnaN 1374..2504 (+) 1131 WP_002288361.1 DNA polymerase III subunit beta -
  C6Y19_RS00015 yaaA 2732..2974 (+) 243 WP_002295251.1 S4 domain-containing protein YaaA -
  C6Y19_RS00020 recF 2961..4085 (+) 1125 WP_002301794.1 DNA replication/repair protein RecF -
  C6Y19_RS00025 gyrB 4082..6027 (+) 1946 Protein_4 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C6Y19_RS00030 gyrA 6047..8518 (+) 2472 WP_002303991.1 DNA gyrase subunit A -
  C6Y19_RS00035 rpsF 8754..9053 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  C6Y19_RS00040 ssb 9103..9615 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  C6Y19_RS00045 rpsR 9641..9877 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  C6Y19_RS00050 - 10020..11993 (+) 1974 WP_002288371.1 DHH family phosphoesterase -
  C6Y19_RS00055 rplI 11999..12451 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  C6Y19_RS00060 dnaB 12725..14092 (+) 1368 WP_002288373.1 replicative DNA helicase -
  C6Y19_RS00065 - 14872..16164 (+) 1293 WP_002288375.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=277629 C6Y19_RS00040 WP_002288368.1 9103..9615(+) (ssb) [Enterococcus faecium strain AUSMDU00004024]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=277629 C6Y19_RS00040 WP_002288368.1 9103..9615(+) (ssb) [Enterococcus faecium strain AUSMDU00004024]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment