Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W78_RS05810 Genome accession   NZ_CP027461
Coordinates   1148535..1149164 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 95-3322     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143535..1154164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W78_RS05785 ycbZ 1143935..1145695 (-) 1761 WP_106873689.1 Lon protease family protein -
  C6W78_RS05790 matP 1145881..1146333 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  C6W78_RS05795 ompA 1146411..1147451 (-) 1041 WP_001350588.1 porin OmpA -
  C6W78_RS05805 sulA 1147807..1148316 (-) 510 WP_042020526.1 SOS-induced cell division inhibitor SulA -
  C6W78_RS05810 sxy/tfoX 1148535..1149164 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W78_RS05815 yccS 1149127..1151289 (-) 2163 WP_000875040.1 YccS family putative transporter -
  C6W78_RS05820 yccF 1151299..1151745 (-) 447 WP_001261236.1 YccF domain-containing protein -
  C6W78_RS05825 helD 1151868..1153922 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277399 C6W78_RS05810 WP_000839153.1 1148535..1149164(+) (sxy/tfoX) [Escherichia coli strain 95-3322]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277399 C6W78_RS05810 WP_000839153.1 1148535..1149164(+) (sxy/tfoX) [Escherichia coli strain 95-3322]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment