Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ABAYE_RS18025 Genome accession   NC_010410
Coordinates   3665765..3667456 (+) Length   563 a.a.
NCBI ID   WP_000233545.1    Uniprot ID   -
Organism   Acinetobacter baumannii AYE     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3660765..3672456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABAYE_RS18000 (ABAYE3624) - 3661812..3663020 (+) 1209 WP_001206290.1 IS4-like element IS10A family transposase -
  ABAYE_RS20870 intI1 3663145..3663444 (+) 300 Protein_3437 class 1 integron integrase IntI1 -
  ABAYE_RS20690 (ABAYE3627) - 3663448..3663798 (+) 351 Protein_3438 TCP-1/cpn60 chaperonin family protein -
  ABAYE_RS20020 - 3663937..3665481 (+) 1545 WP_079261366.1 transposase -
  ABAYE_RS18025 (ABAYE3629) recG 3665765..3667456 (+) 1692 WP_000233545.1 ATP-dependent DNA helicase RecG Machinery gene
  ABAYE_RS18030 (ABAYE3630) aac(6')-Ian 3667408..3667980 (-) 573 WP_000959805.1 aminoglycoside N-acetyltransferase AAC(6')-Ian -
  ABAYE_RS20875 intI1 3668182..3668481 (+) 300 Protein_3442 class 1 integron integrase IntI1 -
  ABAYE_RS20700 (ABAYE3633) - 3668485..3668835 (+) 351 Protein_3443 TCP-1/cpn60 chaperonin family protein -
  ABAYE_RS20030 - 3669110..3670594 (+) 1485 WP_227501391.1 transposase -
  ABAYE_RS18055 (ABAYE3636) - 3670686..3671411 (-) 726 WP_001253716.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 62310.92 Da        Isoelectric Point: 6.6573

>NTDB_id=27735 ABAYE_RS18025 WP_000233545.1 3665765..3667456(+) (recG) [Acinetobacter baumannii AYE]
MVHPDHIAPIDGSDDLPLIEPVYPLTAGLSPKTLARAMRDALTRIPDLPEWQDKTLMQRENFPSFTQALHHLHLPEEPED
IAQDSPSRRRLAYDEFLAGQMALALVRAKTKRLSGRPLNGTGKITAQILANLPYSLTKGQEQAVKDIIGDLKQPERMLRL
LQGDVGAGKTVVGLLSMAHAAESGGQSALMAPTEVLARQHFATIAPLAEKAGLKAALLTGREKGKERQRILDELADGTIH
IIIGTHALFQDKVEYHDLVFVIIDEQHRFGVHQRLQLTAKGTAPDMLVMTATPIPRTLVLTAFGDMDVSKLTEKPAGRQP
ITTAIVPSERLSEIVDRMRKAISEGQKIYWICPLVEESEHVELTSAEERFQSFLPVFGDKLGLIHGRMTGQEKDDAMLAF
KRGDTRLLIATTVIEVGVDVPDATVIVIEHAERFGLSQLHQLRGRVGRGDKPSTCLLLYKGPLGEIAKARLQVMRETEDG
FRIAEEDLKLRGEGELLGTRQSGTPGFKLASMEAHTDLLEIARKDARLMLERDIDLQSERGQALRLLLYIFGRDEAIRLL
RAG

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=27735 ABAYE_RS18025 WP_000233545.1 3665765..3667456(+) (recG) [Acinetobacter baumannii AYE]
ATGGTGCATCCCGATCATATTGCGCCGATTGACGGCAGCGATGATCTGCCATTGATTGAGCCGGTCTATCCGCTGACCGC
CGGCCTTTCACCCAAAACACTGGCACGCGCGATGCGCGATGCGCTGACACGCATTCCCGATCTGCCGGAATGGCAGGACA
AGACGCTGATGCAGCGGGAGAATTTTCCGTCTTTCACGCAAGCACTGCATCATCTGCACCTGCCGGAAGAACCGGAAGAT
ATTGCACAGGACAGCCCTTCGCGCCGCCGCCTCGCCTATGATGAATTTCTCGCCGGACAAATGGCACTGGCACTGGTGCG
CGCCAAGACCAAGCGTCTCTCCGGTCGCCCGCTCAATGGCACAGGCAAAATCACCGCACAGATATTGGCCAACCTACCCT
ATAGCCTGACGAAAGGTCAGGAACAGGCGGTTAAAGATATTATCGGCGATCTCAAGCAGCCGGAACGCATGCTGCGTCTG
CTGCAAGGTGATGTTGGTGCCGGTAAAACCGTGGTCGGTCTGTTGTCTATGGCACATGCGGCAGAATCGGGCGGACAATC
CGCCTTGATGGCACCGACAGAAGTGCTGGCACGTCAGCATTTTGCCACCATTGCGCCGCTGGCTGAAAAAGCCGGATTGA
AAGCTGCTTTGCTGACAGGGCGTGAAAAAGGCAAAGAGCGCCAGCGCATTCTCGATGAACTGGCCGATGGTACAATCCAT
ATCATTATCGGCACCCATGCGCTGTTTCAGGATAAAGTTGAATATCATGATCTGGTGTTTGTAATCATTGATGAGCAGCA
CAGGTTCGGTGTGCATCAGCGCTTGCAGCTTACCGCCAAGGGGACTGCGCCGGATATGCTGGTGATGACTGCAACGCCGA
TCCCGCGCACGCTGGTTCTGACCGCCTTTGGCGATATGGATGTTTCCAAGCTCACAGAAAAACCGGCAGGCCGCCAGCCA
ATCACCACAGCAATTGTGCCAAGTGAGCGGTTGAGTGAAATTGTTGACCGGATGCGTAAGGCAATCTCCGAGGGACAGAA
AATCTACTGGATCTGCCCGCTGGTGGAGGAATCAGAACATGTTGAACTGACCTCTGCCGAAGAACGCTTTCAATCGTTTC
TACCGGTATTTGGTGACAAACTCGGCCTCATTCATGGCCGCATGACCGGACAGGAAAAAGACGATGCGATGCTGGCCTTC
AAGCGTGGTGATACCCGCCTGCTGATTGCCACCACCGTTATCGAGGTTGGCGTCGATGTGCCGGATGCAACCGTGATTGT
GATTGAACATGCCGAGCGTTTCGGCCTGTCGCAATTGCATCAGCTGCGCGGTCGTGTCGGGCGTGGTGACAAACCATCCA
CCTGTCTGCTGCTCTATAAAGGCCCTCTGGGGGAAATTGCCAAGGCGCGTTTACAGGTGATGCGCGAGACGGAAGACGGC
TTCCGCATTGCCGAAGAGGACCTGAAACTGCGCGGTGAAGGCGAGCTGCTCGGCACCCGCCAATCCGGCACTCCGGGCTT
TAAACTCGCCTCTATGGAAGCGCATACTGATCTTCTGGAGATCGCCCGTAAAGATGCGCGGCTGATGCTGGAGCGTGATA
TTGACCTGCAATCTGAGCGCGGTCAGGCACTGCGCCTGCTGCTCTATATTTTCGGCCGTGACGAGGCAATCAGGCTGCTG
CGCGCGGGGTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(477-540)

Helicase conserved C-terminal domain (Helicase_C)

(338-449)

DEAD/DEAH box helicase (DEAD)

(137-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

45.856

96.448

0.442
  recG/mmsA Streptococcus pneumoniae R6

46.332

92.007

0.426
  recG/mmsA Streptococcus pneumoniae R36A

46.332

92.007

0.426
  recG Bacillus subtilis subsp. subtilis str. 168

44.509

92.185

0.41

Multiple sequence alignment