Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C6N67_RS06405 | Genome accession | NZ_CP027427 |
| Coordinates | 1306632..1307183 (-) | Length | 183 a.a. |
| NCBI ID | WP_010375108.1 | Uniprot ID | A0A0D1LP27 |
| Organism | Weissella cibaria strain BM2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1301632..1312183
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N67_RS06365 (C6N67_06360) | yycF | 1302619..1303320 (-) | 702 | WP_010372075.1 | response regulator YycF | - |
| C6N67_RS06390 (C6N67_06385) | - | 1304480..1305472 (-) | 993 | WP_106444027.1 | IS30 family transposase | - |
| C6N67_RS06395 (C6N67_06390) | - | 1305624..1306106 (-) | 483 | WP_106444324.1 | hypothetical protein | - |
| C6N67_RS06400 (C6N67_06395) | rpsR | 1306338..1306580 (-) | 243 | WP_003608765.1 | 30S ribosomal protein S18 | - |
| C6N67_RS06405 (C6N67_06400) | ssb | 1306632..1307183 (-) | 552 | WP_010375108.1 | single-stranded DNA-binding protein | Machinery gene |
| C6N67_RS06410 (C6N67_06405) | rpsF | 1307260..1307559 (-) | 300 | WP_003608769.1 | 30S ribosomal protein S6 | - |
| C6N67_RS06415 (C6N67_06410) | - | 1308031..1310847 (+) | 2817 | WP_106444325.1 | MucBP domain-containing protein | - |
| C6N67_RS06420 (C6N67_06415) | - | 1310909..1311853 (-) | 945 | WP_099088690.1 | nucleoside hydrolase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 19544.18 Da Isoelectric Point: 4.6085
>NTDB_id=277092 C6N67_RS06405 WP_010375108.1 1306632..1307183(-) (ssb) [Weissella cibaria strain BM2]
MINRVVLVGRLTRDVELRYTTSGAAVGTFSLAVNRQFTNANGERETDFINAVIWRKSAENFANFTSKGSLVAVEGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEQRRAQSGSANNNFGGGQQGGNQGGFNAAPAQNPFGAPASNGNVFGGASTP
AQSSNDPFGGGQEVDISDDDLPF
MINRVVLVGRLTRDVELRYTTSGAAVGTFSLAVNRQFTNANGERETDFINAVIWRKSAENFANFTSKGSLVAVEGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEQRRAQSGSANNNFGGGQQGGNQGGFNAAPAQNPFGAPASNGNVFGGASTP
AQSSNDPFGGGQEVDISDDDLPF
Nucleotide
Download Length: 552 bp
>NTDB_id=277092 C6N67_RS06405 WP_010375108.1 1306632..1307183(-) (ssb) [Weissella cibaria strain BM2]
ATGATTAATCGTGTTGTTCTGGTTGGTCGCTTGACGCGCGACGTTGAATTACGTTACACGACTTCAGGTGCTGCTGTCGG
AACTTTCTCACTTGCTGTTAACCGTCAGTTTACTAACGCTAATGGTGAGCGTGAGACCGACTTTATTAACGCCGTTATCT
GGCGTAAGTCGGCTGAAAACTTTGCAAACTTTACCTCTAAGGGGTCATTGGTTGCAGTTGAAGGTCGTTTGCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTATATGTCACAGAAGTTGTCGTTGATAACTTCTCGTTGTTGGAGAGTCGCGC
TGAAAGTGAGCAACGCCGTGCACAAAGCGGTTCAGCAAACAATAACTTCGGCGGTGGTCAACAGGGTGGCAACCAAGGCG
GCTTTAATGCCGCGCCGGCACAAAACCCATTCGGTGCACCTGCATCAAATGGTAATGTGTTTGGTGGTGCGTCAACACCT
GCACAATCATCTAATGATCCTTTCGGTGGTGGTCAAGAGGTTGATATCTCTGACGATGATCTACCATTCTAA
ATGATTAATCGTGTTGTTCTGGTTGGTCGCTTGACGCGCGACGTTGAATTACGTTACACGACTTCAGGTGCTGCTGTCGG
AACTTTCTCACTTGCTGTTAACCGTCAGTTTACTAACGCTAATGGTGAGCGTGAGACCGACTTTATTAACGCCGTTATCT
GGCGTAAGTCGGCTGAAAACTTTGCAAACTTTACCTCTAAGGGGTCATTGGTTGCAGTTGAAGGTCGTTTGCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTATATGTCACAGAAGTTGTCGTTGATAACTTCTCGTTGTTGGAGAGTCGCGC
TGAAAGTGAGCAACGCCGTGCACAAAGCGGTTCAGCAAACAATAACTTCGGCGGTGGTCAACAGGGTGGCAACCAAGGCG
GCTTTAATGCCGCGCCGGCACAAAACCCATTCGGTGCACCTGCATCAAATGGTAATGTGTTTGGTGGTGCGTCAACACCT
GCACAATCATCTAATGATCCTTTCGGTGGTGGTCAAGAGGTTGATATCTCTGACGATGATCTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
69.565 |
100 |
0.699 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.804 |
100 |
0.541 |
| ssb | Glaesserella parasuis strain SC1401 |
35.233 |
100 |
0.372 |