Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CFM83_RS01280 Genome accession   NZ_CP032640
Coordinates   288852..289463 (+) Length   203 a.a.
NCBI ID   WP_016264642.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 283852..294463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFM83_RS01265 (CFM83_01265) hexB 285519..287480 (+) 1962 WP_035146236.1 DNA mismatch repair endonuclease MutL Machinery gene
  CFM83_RS01270 (CFM83_01270) - 287480..288025 (+) 546 WP_016264640.1 Maf family protein -
  CFM83_RS01275 (CFM83_01275) - 288038..288601 (+) 564 WP_016264641.1 TIGR00730 family Rossman fold protein -
  CFM83_RS01280 (CFM83_01280) ruvA 288852..289463 (+) 612 WP_016264642.1 Holliday junction branch migration protein RuvA Machinery gene
  CFM83_RS01285 (CFM83_01285) ruvB 289476..290483 (+) 1008 WP_016264643.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CFM83_RS01290 (CFM83_01290) queA 290498..291529 (+) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CFM83_RS01295 (CFM83_01295) - 291556..292077 (+) 522 WP_016264644.1 GNAT family N-acetyltransferase -
  CFM83_RS01300 (CFM83_01300) arcA 292285..293520 (+) 1236 WP_016264645.1 arginine deiminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22189.38 Da        Isoelectric Point: 4.8129

>NTDB_id=277080 CFM83_RS01280 WP_016264642.1 288852..289463(+) (ruvA) [Latilactobacillus sakei strain ZFM229]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIYVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQITLDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=277080 CFM83_RS01280 WP_016264642.1 288852..289463(+) (ruvA) [Latilactobacillus sakei strain ZFM229]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTACAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTATGTCCACCAAGCAGTACGCG
ATACTGATATTACGCTTTTTGGTTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTCGGGAAGAAGACGGCCCAACAGATTACCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGTGACTCACCTGAATTAAGTGATGCG
CTAGCAGCTTTGAGTGCACTTGGCTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(157-201)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.78

100

0.493
  ruvA Streptococcus pneumoniae R6

48.78

100

0.493
  ruvA Streptococcus pneumoniae D39

48.78

100

0.493
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463